Evidence map›Paper›PMID 17160380›Full record

ArticleJournal of cancer research and clinical oncology2007

A gene expression profile of tumor suppressor genes commonly methylated in bladder cancer.

Frank Christoph, Stefan Hinz, Carsten Kempkensteffen, Steffen Weikert, Hans Krause, Martin Schostak, Mark Schrader, Kurt Miller

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Evading apoptosis in cancer.Trends in cell biology · 2013
    Review
  5. Article
  6. Article
  7. Aberrant promoter methylation of multiple genes during pathogenesis of bladder cancer.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2008
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Frank ChristophDepartment of Urology, Charité-Universitätsmedizin Berlin, Campus Benjamin Franklin, Hindenburgdamm 30, 12200 Berlin, Germany. frank.christoph@charite.de
Stefan Hinz
Carsten Kempkensteffen
Steffen Weikert
Hans Krause
Martin Schostak
Mark Schrader
Kurt Miller
Charité - Universitätsmedizin Berlin · DEFranklin University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe functional relationship between promoter hypermethylation and gene inactivation has been demonstrated for few genes only. We examined the promoter methylation status of two important tumor suppressor genes APAF-1 and DAPK-1 in bladder cancer as well as the mRNA expression pattern of these two genes for possible correlation between promoter hypermethylation and transcriptional repression.

methodsThe methylation status and mRNA expression levels were related to clinicopathological features in 34 patients with transitional cell carcinoma (TCC) of the bladder with a median clinical follow-up of more than 45 months. Tissue from ten patients with nonmalignant disease served as a control group. Quantitative real-time PCR-based detection methods were used for determination of the normalized index of methylation (NIM) as well as the mRNA expression level.

resultsAPAF-1 and DAPK-1 methylation and mRNA expression was observed in all tumor and normal control samples investigated. Methylation (NIM) levels were significantly higher in tumor tissue for APAF-1 and DAPK-1, but median mRNA expression levels did not differ significantly comparing tumorous and non tumorous tissue. No correlation between expression levels of APAF-1 and DAPK-1 mRNA and tumor stage or grade was observed. However, in superficial TCC a strong correlation between higher NIM levels and lower mRNA expression of the APAF-1 gene was observed (P = 0.014).

conclusionsOur results, although preliminary, provide first time in vivo expression analysis of the APAF-1 gene in bladder cancer specimen, suggesting expression control by promoter methylation in early stage tumor disease of the bladder.

Indexed as

DNA MethylationGenes, Tumor SuppressorAgedApoptosis Regulatory ProteinsApoptotic Protease-Activating Factor 1Calcium-Calmodulin-Dependent Protein KinasesCarcinoma, Transitional CellDeath-Associated Protein KinasesFemaleGene Expression ProfilingHumansMaleNeoplasm InvasivenessNeoplasm Recurrence, LocalPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionAPAF1 protein, humanApoptosis Regulatory ProteinsApoptotic Protease-Activating Factor 1Calcium-Calmodulin-Dependent Protein KinasesDAPK1 protein, humanDeath-Associated Protein KinasesRNA, Messenger

Identifiers

PMID17160380
PMCPMC12160880
OpenAlexW2046885594

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.