Evidence map›Paper›PMID 17156454›Full record

ArticleGenome biology2006

Generation of medaka gene knockout models by target-selected mutagenesis.

Yoshihito Taniguchi, Shunichi Takeda, Makoto Furutani-Seiki, Yasuhiro Kamei, Takeshi Todo, Takao Sasado, Tomonori Deguchi, Hisato Kondoh, Josine Mudde, Mitsuyoshi Yamazoe and 6 more

Abstract read
In one paragraph

Article in Genome biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed.

  1. Article
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  11. Article
  12. Review
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  14. Article
  15. Article
  16. Sexually dimorphic role of oxytocin in medaka mate choice.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  17. Involvement of Rev1 in alkylating agent-induced loss of heterozygosity in Oryzias latipes.Genes to cells : devoted to molecular & cellular mechanisms · 2020
    Article
  18. Renal lesions in leptin receptor-deficient medaka (Journal of toxicologic pathology · 2019
    Article
  19. Article
  20. Article

2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Yoshihito TaniguchiDepartment of Radiation Genetics, CREST, Japan Science and Technology Laboratory, Kyoto University, Yoshida Konoe, Sakyo-ku, Kyoto 606-8501, Japan. .
Shunichi Takeda
Makoto Furutani-Seiki
Yasuhiro Kamei
Takeshi Todo
Takao Sasado
Tomonori Deguchi
Hisato Kondoh
Josine Mudde
Mitsuyoshi Yamazoe
Masayuki Hidaka
Hiroshi Mitani
Atsushi Toyoda
Yoshiyuki Sakaki
Ronald H A Plasterk
Edwin Cuppen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have established a reverse genetics approach for the routine generation of medaka (Oryzias latipes) gene knockouts. A cryopreserved library of N-ethyl-N-nitrosourea (ENU) mutagenized fish was screened by high-throughput resequencing for induced point mutations. Nonsense and splice site mutations were retrieved for the Blm, Sirt1, Parkin and p53 genes and functional characterization of p53 mutants indicated a complete knockout of p53 function. The current cryopreserved resource is expected to contain knockouts for most medaka genes.

Indexed as

Animals, Genetically ModifiedModels, GeneticAdenosine TriphosphatasesAnimalsBase SequenceDNA HelicasesDNA PrimersEthylnitrosoureaFemaleGenes, p53MaleMutagenesis, Site-DirectedOryziasPoint MutationRecQ HelicasesUbiquitin-Protein LigasesAdenosine TriphosphatasesBloom syndrome proteinDNA HelicasesDNA PrimersEthylnitrosoureaparkin proteinRecQ HelicasesUbiquitin-Protein Ligases

Identifiers

PMID17156454
PMCPMC1794429

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.