Evidence map›Paper›PMID 17156023›Full record

ArticleFEMS yeast research2006

Genome-wide analysis of the response to protein glycosylation deficiency in yeast.

Paul J Cullen, Rufeng Xu-Friedman, Jeffrey Delrow, George F Sprague

Open access · bronzeAbstract read
In one paragraph

Article in FEMS yeast research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Paul J CullenDepartment of Biological Sciences, State University at Buffalo, Buffalo, NY 14260-1300, USA. pjcullen@buffalo.edu
Rufeng Xu-Friedman
Jeffrey Delrow
George F Sprague
University at Buffalo, State University of New York · USFred Hutch Cancer Center · USUniversity of Oregon · US

Funding

Control of MAPK Signaling by Cell Polarity ProteinsR01GM098629 · NIGMS · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI CULLEN, PAUL JAMES · 2011 to 2024
$4.4M
GENETIC REGULATION OF YEAST CELL TYPER01GM030027 · NIGMS · UNIVERSITY OF OREGON · PI SPRAGUE, GEORGE F. · 1985 to 2008
$3.0M
NEGATIVE REGULATORS OF YEAST PHEROMONE RESPONSE PATHWAYF32GM019188 · NIGMS · UNIVERSITY OF OREGON · PI CULLEN, PAUL J · 1998 to 2000
$39k
NIGMS NIH HHS F32 GM019188NIGMS NIH HHS GM-30027NIGMS NIH HHS R01 GM030027NIGMS NIH HHS R01 GM098629
6 · The paper itself

Abstract

Protein modification by glycosylation occurs through an essential biochemical pathway that produces mannosyl side chain substrates, which are covalently attached to proteins in the endoplasmic reticulum. We used DNA microarray analysis to characterize the cellular response to a conditional defect (pmi40-101) in the protein glycosylation pathway. Expression profiles were obtained from DNA microarrays containing essentially every gene from Saccharomyces cerevisiae. We validated the microarray analysis by examining the expression patterns of induced genes using transcriptional lacZ fusions. The major class of genes differentially expressed in the glycosylation mutant overlapped significantly with that of a starvation response and included those required for gluconeogenesis, the tricarboxylic acid and glyoxylate cycles, and protein and amino acid biosynthesis. Two mitogen-activated protein (MAP) kinase pathways were also activated in the mutant, the filamentous growth and protein kinase C pathways. Taken together, our results suggest that a checkpoint is activated in response to a protein glycosylation defect, allowing the cell to mount an adaptive response by the activation of multiple MAP kinase pathways.

Indexed as

Gene Expression ProfilingGene Expression Regulation, FungalGenome, FungalGlycosylationMAP Kinase Signaling SystemMutationOligonucleotide Array Sequence AnalysisProtein FoldingProtein Kinase CSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsProtein Kinase CSaccharomyces cerevisiae Proteins

Identifiers

PMID17156023
PMCPMC4447327
OpenAlexW2044849371

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.