Evidence map›Paper›PMID 17151120›Full record

ArticleJournal of virology2007

Adeno-associated virus site-specific integration is regulated by TRP-185.

Noriaki Yamamoto, Masato Suzuki, Masa-Aki Kawano, Takamasa Inoue, Ryou-U Takahashi, Hiroko Tsukamoto, Teruya Enomoto, Yuki Yamaguchi, Tadashi Wada, Hiroshi Handa

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Gene therapy using adeno-associated virus vectors.Clinical microbiology reviews · 2008
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Noriaki YamamotoGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8501, Japan.
Masato Suzuki
Masa-Aki Kawano
Takamasa Inoue
Ryou-U Takahashi
Hiroko Tsukamoto
Teruya Enomoto
Yuki Yamaguchi
Tadashi Wada
Hiroshi Handa
Research Institute for Bioscience and Biotechnology · NPTokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adeno-associated virus (AAV) integrates site specifically into the AAVS1 locus on human chromosome 19. Although recruitment of the AAV nonstructural protein Rep78/68 to the Rep binding site (RBS) on AAVS1 is thought to be an essential step, the mechanism of the site-specific integration, particularly, how the site of integration is determined, remains largely unknown. Here we describe the identification and characterization of a new cellular regulator of AAV site-specific integration. TAR RNA loop binding protein 185 (TRP-185), previously reported to associate with human immunodeficiency virus type 1 TAR RNA, binds to AAVS1 DNA. Our data suggest that TRP-185 suppresses AAV integration at the AAVS1 RBS and enhances AAV integration into a region downstream of the RBS. TRP-185 bound to Rep68 directly, changing the Rep68 DNA binding property and stimulating Rep68 helicase activity. We present a model in which TRP-185 changes the specificity of the AAV integration site from the RBS to a downstream region by acting as a molecular chaperone that promotes Rep68 complex formation competent for 3'-->5' DNA helicase activity.

Indexed as

Gene Expression Regulation, ViralBinding SitesChromosomes, Human, Pair 19DependovirusDNA-Binding ProteinsHeLa CellsHumansNuclear ProteinsRNA-Binding ProteinsTrans-Activation Responsive RNA-Binding ProteinViral ProteinsVirus IntegrationDNA-Binding ProteinsNuclear ProteinsRNA-Binding ProteinsTARBP1 protein, humanTrans-Activation Responsive RNA-Binding ProteinViral Proteins

Identifiers

PMID17151120
PMCPMC1797547
OpenAlexW2007086517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.