ArticleNucleic acids research2007
Comparasite: a database for comparative study of transcriptomes of parasites defined by full-length cDNAs.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed, 32 citations in OpenAlex.
- Review
- Comparative studies of Toxoplasma gondii transcriptomes: insights into stage conversion based on gene expression profiling and alternative splicing.Parasites & vectors · 2018Article
- UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies.Malaria journal · 2016Article
- Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments.BMC systems biology · 2015Article
- The case for a rational genome-based vaccine against malaria.Frontiers in microbiology · 2014Review
- A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum.BMC bioinformatics · 2013Article
- SpiroESTdb: a transcriptome database and online tool for sparganum expressed sequences tags.BMC research notes · 2012Article
- A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation.PLoS neglected tropical diseases · 2012Article
- Directional gene expression and antisense transcripts in sexual and asexual stages of Plasmodium falciparum.BMC genomics · 2011Article
- Sterile protective immunity to malaria is associated with a panel of novel P. falciparum antigens.Molecular & cellular proteomics : MCP · 2011Article
- RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts.Nucleic acids research · 2011Article
- In Silico Prediction of Evolutionarily Conserved GC-Rich Elements Associated with Antigenic Proteins of Plasmodium falciparum.Evolutionary bioinformatics online · 2011Article
- Cryptosporidium: genomic and biochemical features.Experimental parasitology · 2010Review
- Article
- A family of diverse Kunitz inhibitors from Echinococcus granulosus potentially involved in host-parasite cross-talk.PloS one · 2009Article
- Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs.BMC genomics · 2009Article
- Construction of EST database for comparative gene studies of Acanthamoeba.The Korean journal of parasitology · 2009Article
- Full-Malaria/Parasites and Full-Arthropods: databases of full-length cDNAs of parasites and arthropods, update 2009.Nucleic acids research · 2009Article
- PlasmoDB: a functional genomic database for malaria parasites.Nucleic acids research · 2009Article
- Distinct and stage specific nuclear factors regulate the expression of falcipains, Plasmodium falciparum cysteine proteases.BMC molecular biology · 2008Article
Corrections and comments
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Comparasite is a database for comparative studies of transcriptomes of parasites. In this database, each data is defined by the full-length cDNAs from various apicomplexan parasites. It integrates seven individual databases, Full-Parasites, consisting of numerous full-length cDNA clones that we have produced and sequenced: 12,484 cDNA sequences from Plasmodium falciparum, 11,262 from Plasmodium yoelii, 9633 from Plasmodium vivax, 1518 from Plasmodium berghei, 7400 from Toxoplasma gondii, 5921 from Cryptosporidium parvum and 10,966 from the tapeworm Echinococcus multilocularis. Putatively counterpart gene groups are clustered and comparative analysis of any combination of six apicomplexa species is implemented, such as interspecies comparisons regarding protein motifs (InterPro), predicted subcellular localization signals (PSORT), transmembrane regions (SOSUI) or upstream promoter elements. By specifying keywords and other search conditions, Comparasite retrieves putative counterpart gene groups containing a given feature in common or in a species-specific manner. By enabling multi-faceted comparative analyses of genes of apicomplexa protozoa, monophyletic organisms that have evolved to diversify to parasitize various hosts by adopting complex life cycles, Comparasite should help elucidate the mechanism behind parasitism. Our full-length cDNA databases and Comparasite are accessible from http://fullmal.ims.u-tokyo.ac.jp.
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