Evidence map›Paper›PMID 17146638›Full record

ArticleHuman genetics2007

The chemokine (C-C-motif) receptor 3 (CCR3) gene is linked and associated with age at menarche in Caucasian females.

Fang Yang, Dong-hai Xiong, Yan Guo, Hui Shen, Peng Xiao, Feng Zhang, Hui Jiang, Robert R Recker, Hong-wen Deng

Open access · greenAbstract read
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Genome-wide copy number variation association analyses for age at menarche.The Journal of clinical endocrinology and metabolism · 2012
    Article
  5. Article
  6. Article
  7. Association weight matrix for the genetic dissection of puberty in beef cattle.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Fang YangLaboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University, Changsha, Hunan 410081, People's Republic of China.
Dong-hai Xiong
Yan Guo
Hui Shen
Peng Xiao
Feng Zhang
Hui Jiang
Robert R Recker
Hong-wen Deng
Creighton University · USXi'an Jiaotong University · CNHunan Normal University · CN

Funding

ROBUST AND POWERFUL TEST OF CANDIDATE GENES TO BONE MASSR01AR050496 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2004 to 2013
$3.8M
CHARACTERIZATION OF DELETERIOUS GENOMIC MUTATIONSR01GM060402 · NIGMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2000 to 2005
$889k
Genetic Basis of Osteoporotic Fractures and Bone MassK01AR002170 · NIAMS · CREIGHTON UNIVERSITY · PI DENG, HONG-WEN · 2001 to 2005
$505k
GENETIC LINKAGE TO LOW PEAK BONE MASSR01AR045349 · NIAMS · CREIGHTON UNIVERSITY · PI RECKER, ROBERT R. · 1997 to 2000
$188k
NIAMS NIH HHS K01 AR002170NIAMS NIH HHS K01 AR02170-01NIAMS NIH HHS R01 AR050496NIAMS NIH HHS R01 AR45349-01NIGMS NIH HHS R01 GM060402NIGMS NIH HHS R01 GM60402-01A1
6 · The paper itself

Abstract

Chemokine (C-C-motif) receptor 3 (CCR3), playing an important role in endometrium related metabolic pathways, may influence the onset of menarche. To test linkage and/or association between CCR3 polymorphisms with the variation of age at menarche (AAM) in Caucasian females, we recruited a sample of 1,048 females from 354 Caucasian nuclear families and genotyped 16 SNPs spanning the entire CCR3 gene. Linkage disequilibrium and haplotype blocks were inferred by Haploview. Both single-SNP markers and haplotypes were tested for linkage and/or association with AAM using QTDT (quantitative transmission disequilibrium test). We also tested associations between CCR3 polymorphisms and AAM in a selected random sample of daughters using ANOVA (analysis of variance). We identified two haplotype blocks. Only block two showed significant results. After correction for multiple testing, significant total associations of SNP7, SNP9 with AAM were detected (P = 0.009 and 0.006, respectively). We also detected significant within-family association of SNP9 (P = 0.01). SNP14 was linked to AAM (P = 0.02) at the nominal level. In addition, there was evidence of significant total association and nominal significant linkage (P = 0.008 and 0.03, respectively) with AAM for the haplotype AGA reconstructed by SNP7, SNP9 and SNP13. ANOVA confirmed the results by QTDT. For the first time we reported that CCR3 is linked and associated with AAM variation in Caucasian women. However, further studies are necessary to substantiate our conclusions.

Indexed as

Genetic LinkageAgingAllelesAmino Acid MotifsEndometriumFemaleHumansMaleMenarchePolymorphism, Single NucleotideRandom AllocationReceptors, CCR3Receptors, ChemokineWhite PeopleCCR3 protein, humanReceptors, CCR3Receptors, Chemokine

Identifiers

PMID17146638
PMCPMC1829487
OpenAlexW1991987899

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.