ArticleNucleic acids research2007
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- New Gene Markers Expressed in Porcine Oviductal Epithelial Cells Cultured Primary In Vitro Are Involved in Ontological Groups Representing Physiological Processes of Porcine Oocytes.International journal of molecular sciences · 2021Article
- Characterization of the Porcine CLEC12A and Analysis of Its Expression on Blood Dendritic Cell Subsets.Frontiers in immunology · 2020Article
- New Molecular Markers Involved in Regulation of Ovarian Granulosa Cell Morphogenesis, Development and Differentiation during Short-Term Primary In Vitro Culture-Transcriptomic and Histochemical Study Based on Ovaries and Individual Separated Follicles.International journal of molecular sciences · 2019Article
- Haemophilus parasuis α-2,3-sialyltransferase-mediated lipooligosaccharide sialylation contributes to bacterial pathogenicity.Virulence · 2018Article
- Large-scale sequencing based on full-length-enriched cDNA libraries in pigs: contribution to annotation of the pig genome draft sequence.BMC genomics · 2012Article
- Cloning and expression profiling of the VLDLR gene associated with egg performance in duck (Anas platyrhynchos).Genetics, selection, evolution : GSE · 2011Article
- Targeted SNP discovery in Atlantic salmon (Salmo salar) genes using a 3'UTR-primed SNP detection approach.BMC genomics · 2010Article
- Characterization of full-length sequenced cDNA inserts (FLIcs) from Atlantic salmon (Salmo salar).BMC genomics · 2009Article
- Advanced technologies for genomic analysis in farm animals and its application for QTL mapping.Genetica · 2009Review
- Mining for single nucleotide polymorphisms in pig genome sequence data.BMC genomics · 2009Article
- A new 4016-marker radiation hybrid map for porcine-human genome analysis.Mammalian genome : official journal of the International Mammalian Genome Society · 2008Article
- GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.Nucleic acids research · 2007Article
- Advances in swine transcriptomics.International journal of biological sciences · 2007Review
- Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags.Genome biology · 2007Article
- ANEXdb: an integrated animal ANnotation and microarray EXpression database.Mammalian genome : official journal of the International Mammalian Genome SocietyArticle
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8 authors.
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Abstract
We formerly released the porcine expressed sequence tag (EST) database Pig EST Data Explorer (PEDE; http://pede.dna.affrc.go.jp/), which comprised 68,076 high-quality ESTs obtained by using full-length-enriched cDNA libraries derived from seven tissues. We have added eight tissues and cell types to the EST analysis and have integrated 94,555 additional high-quality ESTs into the database. We also fully sequenced the inserts of 10,147 of the cDNA clones that had undergone EST analysis; the sequences and annotation of the cDNA clones were stored in the database. Further, we constructed an interface that can be used to perform various searches in the database. The PEDE database is the primary resource of expressed pig genes that are supported by full-length cDNA sequences. This resource not only enables us to pick cDNA clones of interest for a particular analysis, but it also confirms and thus contributes to the sequencing integrity of the pig genome, which is now being compiled by an international consortium (http://www.piggenome.org/). PEDE has therefore evolved into what we now call 'Pig Expression Data Explorer'.
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