Evidence map›Paper›PMID 17142892›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2006

Structure of HLA-A*1101 in complex with a hepatitis B peptide homologue.

Thomas Blicher, Jette Sandholm Kastrup, Lars Østergaard Pedersen, Søren Buus, Michael Gajhede

Open access · greenAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Structure of a SARS coronavirus-derived peptide bound to the human major histocompatibility complex class I molecule HLA-B*1501.Acta crystallographica. Section F, Structural biology and crystallization communications · 2008
    Article
  3. Humidity control as a strategy for lattice optimization applied to crystals of HLA-A*1101 complexed with variant peptides from dengue virus.Acta crystallographica. Section F, Structural biology and crystallization communications · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Thomas BlicherBiostructural Research, Department of Medicinal Chemistry, The Danish University of Pharmaceutical Sciences, Universitetsparken 2, DK-2100 Copenhagen, Denmark.
Jette Sandholm Kastrup
Lars Østergaard Pedersen
Søren Buus
Michael Gajhede
University of Copenhagen · DK

Funding

PHS HHS HHSN266200400025C
6 · The paper itself

Abstract

A high-resolution structure of the human MHC-I molecule HLA-A*1101 is presented in which it forms a complex with a sequence homologue of a peptide that occurs naturally in hepatitis B virus DNA polymerase. The sequence of the bound peptide is AIMPARFYPK, while that of the corresponding natural peptide is LIMPARFYPK. The peptide does not make efficient use of the middle E pocket for binding, which leads to a rather superficial and exposed binding mode for the central peptide residues. Despite this, the peptide binds with high affinity (IC50 of 31 nM).

Indexed as

Amino Acid SequenceCrystallizationDNA-Directed DNA PolymeraseHepatitis B virusHLA-A11 AntigenHLA-A AntigensHumansHydrogen BondingOligopeptidesPeptide FragmentsProtein BindingProtein Conformationalanyl-isoleucyl-methionyl-prolyl-alanyl-arginyl-phenylalanyl-tyrosyl-prolyl-lysineDNA-Directed DNA PolymeraseHLA-A*11:01 antigenHLA-A11 AntigenHLA-A AntigensOligopeptidesPeptide Fragments

Identifiers

PMID17142892
PMCPMC2225367
OpenAlexW2029944450

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.