Evidence map›Paper›PMID 17141577›Full record

ArticleDNA repair2007

Specialized mismatch repair function of Glu339 in the Phe-X-Glu motif of yeast Msh6.

Shannon F Holmes, Karin Drotschmann Scarpinato, Scott D McCulloch, Roel M Schaaper, Thomas A Kunkel

Abstract readComparative Study
In one paragraph

Article in DNA repair, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Saccharomyces cerevisiae Msh2-Msh6 DNA binding kinetics reveal a mechanism of targeting sites for DNA mismatch repair.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Shannon F HolmesLaboratory of Molecular Genetics, National Institute of Environmental Health Sciences, NIH, Research Triangle Park, NC 27709, United States.
Karin Drotschmann Scarpinato
Scott D McCulloch
Roel M Schaaper
Thomas A Kunkel
National Institute of Environmental Health Sciences · USTriangle · USWake Forest University · US

Funding

STUDIES OF DNA MISMATCH REPAIRZ01ES065089 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI KUNKEL, THOMAS A · 1997 to 2008
$1.3M
MECHANISMS OF E COLI REPLICATION FIDELITYZ01ES065086 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI SCHAAPER, ROELAND · 1996 to 2008
$649k
The Multiple Partners of Mismatch Repair MutL HomologsF32GM069100 · NIGMS · U.S. NATIONAL INST OF ENVIRON HLTH SCIS · PI HOLMES, SHANNON F · 2003 to 2005
$128k
Intramural NIH HHSNIEHS NIH HHS Z01 ES065089-09NIGMS NIH HHS 5 F32 GM069100-03NIGMS NIH HHS F32 GM069100
6 · The paper itself

Abstract

The major eukaryotic mismatch repair (MMR) pathway requires Msh2-Msh6, which, like Escherichia coli MutS, binds to and participates in repair of the two most common replication errors, single base-base and single base insertion-deletion mismatches. For both types of mismatches, the side chain of E. coli Glu38 in a conserved Phe-X-Glu motif interacts with a mismatched base. The Ovarepsilon of Glu38 forms a hydrogen bond with either the N7 of purines or the N3 of pyrimidines. We show here that changing E. coli Glu38 to alanine results in nearly complete loss of repair of both single base-base and single base deletion mismatches. In contrast, a yeast strain with alanine replacing homologous Glu339 in Msh6 has nearly normal repair for insertion-deletion and most base-base mismatches, but is defective in repairing base-base mismatches characteristic of oxidative stress, e.g. 8-oxo-G.A mismatches. The results suggest that bacterial MutS and yeast Msh2-Msh6 differ in how they recognize and/or process replication errors involving undamaged bases, and that Glu339 in Msh6 may have a specialized role in repairing mismatches containing oxidized bases.

Indexed as

DNA Mismatch RepairAmino Acid MotifsBase Pair MismatchBase SequenceBinding SitesConserved SequenceDNA-Binding ProteinsEscherichia coli ProteinsGlutamic AcidMolecular Sequence DataMutationMutS DNA Mismatch-Binding ProteinPhenotypeSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsDNA-Binding ProteinsEscherichia coli ProteinsGlutamic AcidMSH6 protein, S cerevisiaeMutS DNA Mismatch-Binding ProteinMutS protein, E coliSaccharomyces cerevisiae Proteins

Identifiers

PMID17141577
PMCPMC1839834
OpenAlexW2078420863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.