Evidence map›Paper›PMID 17139254›Full record

ArticleThe EMBO journal2006

Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts.

Amanda J Bird, Mat Gordon, David J Eide, Dennis R Winge

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 113 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Zinc homeostasis in Schizosaccharomyces pombe.Archives of microbiology · 2023
    Review
  8. Global Molecular Response ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. From economy to luxury: Copper homeostasis in Chlamydomonas and other algae.Biochimica et biophysica acta. Molecular cell research · 2020
    Review
  14. Article
  15. Zinc homeostasis in the secretory pathway in yeast.Current opinion in chemical biology · 2020
    Review
  16. Transcription factors and transporters in zinc homeostasis: lessons learned from fungi.Critical reviews in biochemistry and molecular biology · 2020
    Review
  17. Article
  18. Article
  19. The cellular economy of the Saccharomyces cerevisiae zinc proteome.Metallomics : integrated biometal science · 2018
    Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Amanda J BirdDepartments of Medicine and Biochemistry, University of Utah Health Sciences Center, 50 North 1900 East, Salt Lake City, UT 84132, USA.
Mat Gordon
David J Eide
Dennis R Winge
University of Utah · USUniversity of Wisconsin–Madison · US

Funding

UTAH REGIONAL CANCER CENTERP30CA042014 · NCI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Jared P Rutter · 1986 to 2026
$72.6M
REGULATION OF CELLULAR ZINC HOMEOSTASISR01GM056285 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI EIDE, DAVID J · 1997 to 2022
$6.2M
NCI NIH HHS CA42014-18NCI NIH HHS P30 CA042014NIGMS NIH HHS GM 56285NIGMS NIH HHS R01 GM056285
6 · The paper itself

Abstract

The transcriptional activator Zap1 induces target gene expression in response to zinc deficiency. We demonstrate that during zinc starvation, Zap1 is required for the repression of ADH1 expression. ADH1 encodes the major zinc-dependent alcohol dehydrogenase that is utilized during fermentation. During zinc starvation, Zap1 binds upstream of the activator Rap1 and induces an intergenic RNA transcript, ZRR1. ZRR1 expression leads to the transient displacement of Rap1 from the ADH1 promoter resulting in ADH1 repression. Using a microarray-based approach, we screened for additional genes repressed by Zap1 intergenic transcripts. We found that ADH3, the major mitochondrial alcohol dehydrogenase, is regulated in a manner similar to ADH1. Thus, during zinc deficiency, Zap1 mediates the repression of two of the most abundant zinc-requiring enzymes.

Indexed as

Alcohol DehydrogenaseBase SequenceDNA, IntergenicGene Expression Regulation, FungalMolecular Sequence DataPromoter Regions, GeneticRepressor ProteinsRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTrans-ActivatorsTranscription FactorsTranscription, GeneticZincADH1 protein, S cerevisiaeADH3 protein, S cerevisiaeAlcohol DehydrogenaseDNA, IntergenicRAP1 protein, S cerevisiaeRepressor ProteinsRNA, MessengerSaccharomyces cerevisiae ProteinsShelterin ComplexTelomere-Binding ProteinsTrans-ActivatorsTranscription FactorsZAP1 protein, S cerevisiaeZinc

Identifiers

PMID17139254
PMCPMC1698899
OpenAlexW1995972362

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.