Evidence map›Paper›PMID 17138559›Full record

ArticleThe Journal of biological chemistry2007

Probing the architecture of an L-type calcium channel with a charged phenylalkylamine: evidence for a widely open pore and drug trapping.

Stanislav Beyl, Eugen N Timin, Annette Hohaus, Anna Stary, Michaela Kudrnac, Robert H Guy, Steffen Hering

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Roles and Regulation of Voltage-gated Calcium Channels in Arrhythmias.The Journal of innovations in cardiac rhythm management · 2019
    Review
  3. Calcium channel gating.Pflugers Archiv : European journal of physiology · 2018
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The auxiliary subunit gamma 1 of the skeletal muscle L-type Ca2+ channel is an endogenous Ca2+ antagonist.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Stanislav BeylInstitute for Pharmacology and Toxicology, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria.
Eugen N Timin
Annette Hohaus
Anna Stary
Michaela Kudrnac
Robert H Guy
Steffen Hering

Funding

Modeling of the structure and functional mechanisms of voltage-gated channelsZIABC010721 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GUY, HOMER ROBERT · 2009 to 2010
$642k
Modeling of the structure and functional mechanisms of voltage-gated channelsZ01BC010721 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI GUY, HOMER ROBERT · 2006 to 2008
$604k
Austrian Science Fund FWF P 15914Intramural NIH HHS
6 · The paper itself

Abstract

Voltage-gated calcium channels are in a closed conformation at rest and open temporarily when the membrane is depolarized. To gain insight into the molecular architecture of Ca(v)1.2, we probed the closed and open conformations with the charged phenylalkylamine (-)devapamil ((-)qD888). To elucidate the access pathway of (-)D888 to its binding pocket from the intracellular side, we used mutations replacing a highly conserved Ile-781 by threonine/proline in the pore-lining segment IIS6 of Ca(v)1.2 (1). The shifted channel gating of these mutants (by 30-40 mV in the hyperpolarizing direction) enabled us to evoke currents with identical kinetics at different potentials and thus investigate the effect of the membrane potentials on the drug access per se. We show here that under these conditions the development of channel block by (-)qD888 is not affected by the transmembrane voltage. Recovery from block at rest was, however, accelerated at more hyperpolarized voltages. These findings support the conclusion that Ca(v)1.2 must be opening widely to enable free access of the charged (-)D888 molecule to its binding site, whereas drug dissociation from the closed channel conformation is restricted by bulky channel gates. The functional data indicating a location of a trapped (-)D888 molecule close to the central pore region are supported by a homology model illustrating that the closed Ca(v)1.2 is able to accommodate a large cation such as (-)D888.

Indexed as

Ion Channel GatingBinding SitesCalcium Channel BlockersCalcium Channels, L-TypeCell LineHumansProtein BindingProtein ConformationStatic ElectricityVerapamil4-desmethoxyverapamilCalcium Channel BlockersCalcium Channels, L-TypeVerapamil

Identifiers

PMID17138559
PMCPMC3189693

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.