ArticleJournal of virology2007
Reassortment and concerted evolution in banana bunchy top virus genomes.
Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 21 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
21 citing papers in PubMed, 61 citations in OpenAlex.
- Banana bunchy top virus genetic diversity in Pakistan and association of diversity with recombination in its genomes.PloS one · 2022Article
- Evolutionary forces at work in partitiviruses.Virus genes · 2019Review
- Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays.eLife · 2018Article
- Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences.PLoS pathogens · 2017Article
- Low genetic diversity of Banana bunchy top virus, with a sub-regional pattern of variation, in Democratic Republic of Congo.Virus genes · 2016Article
- The Strange Lifestyle of Multipartite Viruses.PLoS pathogens · 2016Review
- Molecular characterization of banana bunchy top virus isolate from Sri Lanka and its genetic relationship with other isolates.Virusdisease · 2016Article
- The global distribution ofVirus evolution · 2015Article
- Identifying geographic hot spots of reassortment in a multipartite plant virus.Evolutionary applications · 2014Article
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- Application of motif-based tools on evolutionary analysis of multipartite single-stranded DNA viruses.PloS one · 2013Article
- Evolutionary dynamics of genome segmentation in multipartite viruses.Proceedings. Biological sciences · 2012Article
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- Recombination in eukaryotic single stranded DNA viruses.Viruses · 2011Review
- 98% identical, 100% wrong: per cent nucleotide identity can lead plant virus epidemiology astray.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2010Article
- Advances in Small Isometric Multicomponent ssDNA Viruses Infecting Plants.Indian journal of virology : an official organ of Indian Virological Society · 2010Article
- Two distinct nanovirus species infecting faba bean in Morocco.Archives of virology · 2010Article
- Reconstitution of authentic nanovirus from multiple cloned DNAs.Journal of virology · 2009Article
- Molecular characterization of an Indian isolate of Banana bunchy top virus based on six genomic DNA components.Virus genes · 2009Article
- Article
Corrections and comments
- Erratum issued
Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The nanovirus Banana bunchy top virus (BBTV) has six standard components in its genome and occasionally contains components encoding additional Rep (replication initiation protein) genes. Phylogenetic network analysis of coding sequences of DNA 1 and 3 confirmed the two major groups of BBTV, a Pacific and an Asian group, but show evidence of web-like phylogenies for some genes. Phylogenetic analysis of 102 major common regions (CR-Ms) from all six components showed a possible concerted evolution within the Pacific group, which is likely due to recombination in this region. The CR-M of additional Rep genes is close to that of DNA 1 and 2. Comparison of tree topologies constructed with DNA 1 and DNA 3 coding sequences of 14 BBTV isolates showed distinct phylogenetic histories based on Kishino-Hasegawa and Shimodaira-Hasegawa tests. The results of principal component analysis of amino acid and codon usages indicate that DNA 1 and 3 have a codon bias different from that of all other genes of nanoviruses, including all currently known additional Rep genes of BBTV, which suggests a possible ancient genome reassortment event between distinctive nanoviruses.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.