Evidence map›Paper›PMID 17135313›Full record

ArticleJournal of virology2007

Genome sequence, full-length infectious cDNA clone, and mapping of viral double-stranded RNA accumulation determinant of hypovirus CHV1-EP721.

Haiyan Lin, Xiuwan Lan, Hong Liao, Todd B Parsley, Donald L Nuss, Baoshan Chen

Abstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Article
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  7. Virome Identification and Characterization ofFrontiers in microbiology · 2020
    Article
  8. Mycoviruses inFrontiers in cellular and infection microbiology · 2019
    Review
  9. Article
  10. Article
  11. Review
  12. Frontiers in microbiology · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Haiyan LinGuangxi Key Laboratory of Subtropical Bioresource Conservation and Utilization, Guangxi University, 100 Daxiu Road, Nanning, Guangxi 530004, People's Republic of China.
Xiuwan Lan
Hong Liao
Todd B Parsley
Donald L Nuss
Baoshan Chen

Funding

HYPOVIRUS MOLECULAR BIOLOGYR01GM055981 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI NUSS, DONALD L · 1997 to 2012
$4.2M
POST-DOCTORAL TRAINING GRANT IN MYCOLOGYT32AI007510 · NIAID · GEORGETOWN UNIVERSITY · PI CALDERONE, RICHARD ARTHUR · 1997 to 2001
$246k
NIAID NIH HHS AI07510-3NIAID NIH HHS T32 AI007510NIGMS NIH HHS GM55981NIGMS NIH HHS R01 GM055981
6 · The paper itself

Abstract

Cryphonectria parasitica strain EP721 is infected with a strain of hypovirus CHV1, CHV1-EP721, and exhibits typical hypovirulence-associated traits such as reduced pigmentation and reduced asexual sporulation. However, the accumulation of the viral double-stranded RNA (dsRNA) in this hypovirus-infected C. parasitica strain is atypically low. We now report the complete nucleotide sequence and construction of a full-length infectious cDNA clone for hypovirus CHV1-EP721. The genome sequence of CHV1-EP721 was determined to be 12,724 bp in length and to share extensive homology with two other hypovirus strains, CHV1-Euro7 and CHV1-EP713, with an average of 99% and 90% identities at the nucleotide level and 99% and 92% identities at the amino acid level, respectively. CHV1-EP721 was successfully introduced into virus-free fungal host strain EP721(-v) by transfection with transcripts derived from a full-length viral cDNA. The transfected strain had a phenotype indistinguishable from that of EP721, and the accumulation of CHV1-EP721 dsRNA in the transfectant was lower than those transfected by CHV1-Euro7 and CHV1-EP713 transcripts. Through the construction of chimeric viruses by domain swapping using infectious cDNA clones of CHV1-EP721, CHV1-EP713, and CHV1-Euro7 hypoviruses, the determinant for the low level of viral dsRNA accumulation in CHV1-EP721 was mapped to the second of two CHV1-EP721 open reading frames (ORFs), ORF B. Further refined swapping of domains within ORF B identified a 2.5-kb coding region between p48 and the polymerase domain of CHV1-EP721 as being responsible for the low viral dsRNA accumulation. Evidence is also provided that low rates of hypovirus transmission through conidial spores correlates with low viral dsRNA accumulation.

Indexed as

Genome, ViralAscomycotaCloning, MolecularCodonDNA, ComplementaryMolecular Sequence DataOpen Reading FramesPlant DiseasesPlantsRNA, Double-StrandedRNA, ViralRNA VirusesSequence Homology, Amino AcidSequence Homology, Nucleic AcidTransfectionVirulenceCodonDNA, ComplementaryRNA, Double-StrandedRNA, Viral

Identifiers

PMID17135313
PMCPMC1797589

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.