ArticleNucleic acids research2007
MBGD: a platform for microbial comparative genomics based on the automated construction of orthologous groups.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.
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46 citing papers in PubMed.
- Possible Effects of Early Maternal Separation on the Gut Microbiota of Captive Adult Giant Pandas.Animals : an open access journal from MDPI · 2022Article
- Prevention and Control of Pathogens Based on Big-Data Mining and Visualization Analysis.Frontiers in molecular biosciences · 2020Article
- Domainoid: domain-oriented orthology inference.BMC bioinformatics · 2019Article
- MBGD update 2018: microbial genome database based on hierarchical orthology relations covering closely related and distantly related comparisons.Nucleic acids research · 2019Article
- Identification of a unique Radical SAM methyltransferase required for the spScientific reports · 2018Article
- DFAST and DAGA: web-based integrated genome annotation tools and resources.Bioscience of microbiota, food and health · 2016Article
- H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes.PLoS genetics · 2016Article
- YersiniaBase: a genomic resource and analysis platform for comparative analysis of Yersinia.BMC bioinformatics · 2015Article
- MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.Nucleic acids research · 2015Article
- Big data and other challenges in the quest for orthologs.Bioinformatics (Oxford, England) · 2014Article
- Improvement of domain-level ortholog clustering by optimizing domain-specific sum-of-pairs score.BMC bioinformatics · 2014Article
- In and out: an analysis of epibiotic vs periplasmic bacterial predators.The ISME journal · 2014Article
- FusoBase: an online Fusobacterium comparative genomic analysis platform.Database : the journal of biological databases and curation · 2014Article
- Comparative genomics boosts target prediction for bacterial small RNAs.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- Genomic Basis for Methicillin Resistance in Staphylococcus aureus.Infection & chemotherapy · 2013Review
- KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.Nucleic acids research · 2013Article
- MBGD update 2013: the microbial genome database for exploring the diversity of microbial world.Nucleic acids research · 2013Article
- Genomic and transcriptomic insights into the thermo-regulated biosynthesis of validamycin in Streptomyces hygroscopicus 5008.BMC genomics · 2012Article
- Gene expression profiling of Mycobacterium avium subsp. paratuberculosis in simulated multi-stress conditions and within THP-1 cells reveals a new kind of interactive intramacrophage behaviour.BMC microbiology · 2012Article
- Revealing mammalian evolutionary relationships by comparative analysis of gene clusters.Genome biology and evolution · 2012Article
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1 author.
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Abstract
The microbial genome database for comparative analysis (MBGD) is a comprehensive platform for microbial comparative genomics. The central function of MBGD is to create orthologous groups among multiple genomes from precomputed all-against-all similarity relationships using the DomClust algorithm. The database now contains >300 published genomes and the number continues to grow. For researchers who are interested in ongoing genome projects, we have now started a new service called 'My MBGD,' which allows users to add their own genome sequences to MBGD for the purpose of identifying orthologs among both the new and the existing genomes. Furthermore, in order to make available the rapidly accumulating information on closely related genome sequences, we enhanced the interface for pairwise genome comparisons using the CGAT interface, which allows users to see nucleotide sequence alignments of non-coding as well as coding regions. MBGD is available at http://mbgd.genome.ad.jp/.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.