Evidence map›Paper›PMID 17130518›Full record

ArticleThe Journal of general physiology2006

A cation-pi interaction between extracellular TEA and an aromatic residue in potassium channels.

Christopher A Ahern, Amy L Eastwood, Henry A Lester, Dennis A Dougherty, Richard Horn

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 62 citations in OpenAlex.

  1. Chemical tuning reveals a cation-π gating bridge between the voltage-sensor and pore domains in the KProceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Divergent CleLife · 2020
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  13. Intermediate state trapping of a voltage sensor.The Journal of general physiology · 2012
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  14. Article
  15. Article
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  19. Allosteric block of KCa2 channels by apamin.The Journal of biological chemistry · 2010
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  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Christopher A AhernDepartment of Molecular Physiology and Biophysics, Jefferson Medical College, Philadelphia, PA 19107, USA.
Amy L Eastwood
Henry A Lester
Dennis A Dougherty
Richard Horn
Division of Chemistry · USJefferson College · USCalifornia Institute of Technology · US

Funding

NICOTINIC SYNAPSES, BIOPHYSICAL STUDIESR01NS011756 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI LESTER, HENRY A. · 1985 to 2009
$3.4M
PROBING RECEPTOR STRUCTURES WITH UNNATURAL AMINO ACIDSR01NS034407 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DOUGHERTY, DENNIS A · 1995 to 2016
$3.1M
Probing Receptor Structures with Unnatural Amino AcidsR37NS034407 · NINDS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI DOUGHERTY, DENNIS A · 2004 to 2010
$2.7M
Molecular Physiology of Voltage-gated Ion ChannelsR01GM079427 · NIGMS · THOMAS JEFFERSON UNIVERSITY · PI HORN, RICHARD J · 2006 to 2009
$1.5M
NIGMS NIH HHS GM079427NIGMS NIH HHS R01 GM079427NINDS NIH HHS NS11756NINDS NIH HHS NS34407NINDS NIH HHS R01 NS011756NINDS NIH HHS R01 NS034407NINDS NIH HHS R37 NS034407
6 · The paper itself

Abstract

Open-channel blockers such as tetraethylammonium (TEA) have a long history as probes of the permeation pathway of ion channels. High affinity blockade by extracellular TEA requires the presence of an aromatic amino acid at a position that sits at the external entrance of the permeation pathway (residue 449 in the eukaryotic voltage-gated potassium channel Shaker). We investigated whether a cation-pi interaction between TEA and such an aromatic residue contributes to TEA block using the in vivo nonsense suppression method to incorporate a series of increasingly fluorinated Phe side chains at position 449. Fluorination, which is known to decrease the cation-pi binding ability of an aromatic ring, progressively increased the inhibitory constant K(i) for the TEA block of Shaker. A larger increase in K(i) was observed when the benzene ring of Phe449 was substituted by nonaromatic cyclohexane. These results support a strong cation-pi component to the TEA block. The data provide an empirical basis for choosing between Shaker models that are based on two classes of reported crystal structures for the bacterial channel KcsA, showing residue Tyr82 in orientations either compatible or incompatible with a cation-pi mechanism. We propose that the aromatic residue at this position in Shaker is favorably oriented for a cation-pi interaction with the permeation pathway. This choice is supported by high level ab initio calculations of the predicted effects of Phe modifications on TEA binding energy.

Indexed as

Amino Acid SequenceBacterial ProteinsComputer SimulationElectrophysiologyPhenylalaninePotassium Channel BlockersPotassium ChannelsProtein ConformationShaker Superfamily of Potassium ChannelsTetraethylammoniumThermodynamicsBacterial ProteinsPhenylalaninePotassium Channel BlockersPotassium Channelsprokaryotic potassium channelShaker Superfamily of Potassium ChannelsTetraethylammonium

Identifiers

PMID17130518
PMCPMC2151593
OpenAlexW2105559183

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.