Evidence map›Paper›PMID 17130168›Full record

ArticleNucleic acids research2006

A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences.

Julianne Smith, Sylvestre Grizot, Sylvain Arnould, Aymeric Duclert, Jean-Charles Epinat, Patrick Chames, Jesús Prieto, Pilar Redondo, Francisco J Blanco, Jerónimo Bravo and 3 more

Open access · goldAbstract readEvaluation Study
In one paragraph

Article in Nucleic acids research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 129 papers.

0numbers the graph read from it
0cells of the map it votes in
129citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

129 citing papers in PubMed, 315 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. RNAi and genome editing of sugarcane: Progress and prospects.The Plant journal : for cell and molecular biology · 2025
    Review
  5. Review
  6. Transgenesis and Genome Engineering: A Historical Review.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Efficient genome editing and gene knockout inPlant biotechnology (Tokyo, Japan) · 2021
    Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. CRISPR/Cas System and Factors Affecting Its Precision and Efficiency.Frontiers in cell and developmental biology · 2021
    Review

69 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 2 countries.

Julianne SmithCELLECTIS S.A., 102 route de Noisy, 93235 Romainville, France.
Sylvestre Grizot
Sylvain Arnould
Aymeric Duclert
Jean-Charles Epinat
Patrick Chames
Jesús Prieto
Pilar Redondo
Francisco J Blanco
Jerónimo Bravo
Guillermo Montoya
Frédéric Pâques
Philippe Duchateau
Spanish National Cancer Research Centre · ESCerenis Therapeutics (France) · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Meganucleases, or homing endonucleases (HEs) are sequence-specific endonucleases with large (>14 bp) cleavage sites that can be used to induce efficient homologous gene targeting in cultured cells and plants. These findings have opened novel perspectives for genome engineering in a wide range of fields, including gene therapy. However, the number of identified HEs does not match the diversity of genomic sequences, and the probability of finding a homing site in a chosen gene is extremely low. Therefore, the design of artificial endonucleases with chosen specificities is under intense investigation. In this report, we describe the first artificial HEs whose specificity has been entirely redesigned to cleave a naturally occurring sequence. First, hundreds of novel endonucleases with locally altered substrate specificity were derived from I-CreI, a Chlamydomonas reinhardti protein belonging to the LAGLIDADG family of HEs. Second, distinct DNA-binding subdomains were identified within the protein. Third, we used these findings to assemble four sets of mutations into heterodimeric endonucleases cleaving a model target or a sequence from the human RAG1 gene. These results demonstrate that the plasticity of LAGLIDADG endonucleases allows extensive engineering, and provide a general method to create novel endonucleases with tailored specificities.

Indexed as

Data Interpretation, StatisticalDimerizationDNADNA Restriction EnzymesGenes, RAG-1HumansMutationNucleotidesPeptide LibraryProtein EngineeringProtein Structure, TertiarySubstrate SpecificityDNADNA Restriction Enzymesendodeoxyribonuclease CreINucleotidesPeptide Library

Identifiers

PMID17130168
PMCPMC1702487
OpenAlexW2058304957

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.