ArticleNucleic acids research2007
The mouse Gene Expression Database (GXD): 2007 update.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 2 of them syntheses that pooled it.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
49 citing papers in PubMed, 2 syntheses or guidelines pooled it.
- Meta-analysis and profiling of cardiac expression modules.Physiological genomics · 2008Pooled it
- Minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE).Nature biotechnology · 2008Guideline
- Genetic architecture underlying changes in carotenoid accumulation during the evolution of the blind Mexican cavefish, Astyanax mexicanus.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2020Article
- Estimation of non-null SNP effect size distributions enables the detection of enriched genes underlying complex traits.PLoS genetics · 2020Article
- Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates.Molecular biology and evolution · 2017Article
- Representation of anatomy in online atlases and databases: a survey and collection of patterns for interface design.BMC developmental biology · 2016Article
- Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Burden analysis of rare microdeletions suggests a strong impact of neurodevelopmental genes in genetic generalised epilepsies.PLoS genetics · 2015Article
- Article
- The mouse Gene Expression Database (GXD): 2014 update.Nucleic acids research · 2014Article
- Identification of germ cell-specific genes in mammalian meiotic prophase.BMC bioinformatics · 2013Article
- The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo.PloS one · 2013Article
- BioGPS and GXD: mouse gene expression data-the benefits and challenges of data integration.Mammalian genome : official journal of the International Mammalian Genome Society · 2012Article
- The Mouse Tumor Biology Database (MTB): a central electronic resource for locating and integrating mouse tumor pathology data.Veterinary pathology · 2012Article
- In silico prediction of a disease-associated STIL mutant and its affect on the recruitment of centromere protein J (CENPJ).FEBS open bio · 2012Article
- Tissue-specific functional networks for prioritizing phenotype and disease genes.PLoS computational biology · 2012Article
- Article
- Anatomy ontologies and potential users: bridging the gap.Journal of biomedical semantics · 2011Article
- The GUDMAP database--an online resource for genitourinary research.Development (Cambridge, England) · 2011Article
- The IKMC web portal: a central point of entry to data and resources from the International Knockout Mouse Consortium.Nucleic acids research · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
8 authors.
Funding
Abstract
The Gene Expression Database (GXD) provides the scientific community with an extensive and easily searchable database of gene expression information about the mouse. Its primary emphasis is on developmental studies. By integrating different types of expression data, GXD aims to provide comprehensive information about expression patterns of transcripts and proteins in wild-type and mutant mice. Integration with the other Mouse Genome Informatics (MGI) databases places the gene expression information in the context of genetic, sequence, functional and phenotypic information, enabling valuable insights into the molecular biology that underlies developmental and disease processes. In recent years the utility of GXD has been greatly enhanced by a large increase in data content, obtained from the literature and provided by researchers doing large-scale in situ and cDNA screens. In addition, we have continued to refine our query and display features to make it easier for users to interrogate the data. GXD is available through the MGI web site at http://www.informatics.jax.org/ or directly at http://www.informatics.jax.org/menus/expression_menu.shtml.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.