ArticleNucleic acids research2007
H-DBAS: alternative splicing database of completely sequenced and manually annotated full-length cDNAs based on H-Invitational.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 42 citations in OpenAlex.
- IntroVerse: a comprehensive database of introns across human tissues.Nucleic acids research · 2023Article
- Alternative RNA splicing in stem cells and cancer stem cells: Importance of transcript-based expression analysis.World journal of stem cells · 2021Review
- Relatively frequent switching of transcription start sites during cerebellar development.BMC genomics · 2017Article
- Towards improved genome-scale metabolic network reconstructions: unification, transcript specificity and beyond.Briefings in bioinformatics · 2016Article
- Application of an RNA amplification method for reliable single-cell transcriptome analysis.BioTechniques · 2015Article
- Review: Alternative Splicing (AS) of Genes As An Approach for Generating Protein Complexity.Current genomics · 2013Article
- Function of alternative splicing.Gene · 2013Review
- NATb/NAT1*4 promotes greater arylamine N-acetyltransferase 1 mediated DNA adducts and mutations than NATa/NAT1*4 following exposure to 4-aminobiphenyl.Molecular carcinogenesis · 2012Article
- Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq.Nucleic acids research · 2011Article
- Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons.Nucleic acids research · 2010Article
- A comprehensive survey of human polymorphisms at conserved splice dinucleotides and its evolutionary relationship with alternative splicing.BMC evolutionary biology · 2010Article
- H-DBAS: human-transcriptome database for alternative splicing: update 2010.Nucleic acids research · 2010Article
- Studying alternative splicing regulatory networks through partial correlation analysis.Genome biology · 2009Article
- AS-ALPS: a database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouse.Nucleic acids research · 2009Article
- VarySysDB: a human genetic polymorphism database based on all H-InvDB transcripts.Nucleic acids research · 2009Article
- Low conservation and species-specific evolution of alternative splicing in humans and mice: comparative genomics analysis using well-annotated full-length cDNAs.Nucleic acids research · 2008Article
- Splice-mediated Variants of Proteins (SpliVaP) - data and characterization of changes in signatures among protein isoforms due to alternative splicing.BMC genomics · 2008Article
- Genome-wide analysis of alternative promoters of human genes using a custom promoter tiling array.BMC genomics · 2008Article
- ProSAS: a database for analyzing alternative splicing in the context of protein structures.Nucleic acids research · 2008Article
- BIPASS: BioInformatics Pipeline Alternative Splicing Services.Nucleic acids research · 2007Article
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Authors and funding
7 authors at 5 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Human-transcriptome DataBase for Alternative Splicing (H-DBAS) is a specialized database of alternatively spliced human transcripts. In this database, each of the alternative splicing (AS) variants corresponds to a completely sequenced and carefully annotated human full-length cDNA, one of those collected for the H-Invitational human-transcriptome annotation meeting. H-DBAS contains 38,664 representative alternative splicing variants (RASVs) in 11,744 loci, in total. The data is retrievable by various features of AS, which were annotated according to manual annotations, such as by patterns of ASs, consequently invoked alternations in the encoded amino acids and affected protein motifs, GO terms, predicted subcellular localization signals and transmembrane domains. The database also records recently identified very complex patterns of AS, in which two distinct genes seemed to be bridged, nested or degenerated (multiple CDS): in all three cases, completely unrelated proteins are encoded by a single locus. By using AS Viewer, each AS event can be analyzed in the context of full-length cDNAs, enabling the user's empirical understanding of the relation between AS event and the consequent alternations in the encoded amino acid sequences together with various kinds of affected protein motifs. H-DBAS is accessible at http://jbirc.jbic.or.jp/h-dbas/.
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