Evidence map›Paper›PMID 17129685›Full record

ArticleGene2007

A deep-branching clade of retrovirus-like retrotransposons in bdelloid rotifers.

Eugene A Gladyshev, Matthew Meselson, Irina R Arkhipova

Open access · greenAbstract read
In one paragraph

Article in Gene, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Drosophila errantiviruses.Mobile genetic elements · 2012
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Extreme resistance of bdelloid rotifers to ionizing radiation.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  15. Article
  16. Telomere-associated endonuclease-deficient Penelope-like retroelements in diverse eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Eugene A GladyshevDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138, USA.
Matthew Meselson
Irina R Arkhipova
Marine Biological Laboratory · USHarvard University · US

Funding

TELOMERES OF BDELLOID AND MONOGONONT ROTIFERSR01GM072708 · NIGMS · HARVARD UNIVERSITY · PI MESELSON, MATTHEW STANLEY · 2005 to 2007
$470k
NIGMS NIH HHS 5R01GM072708-02NIGMS NIH HHS R01 GM072708
6 · The paper itself

Abstract

Rotifers of class Bdelloidea, a group of aquatic invertebrates in which males and meiosis have never been documented, are also unusual in their lack of multicopy LINE-like and gypsy-like retrotransposons, groups inhabiting the genomes of nearly all other metazoans. Bdelloids do contain numerous DNA transposons, both intact and decayed, and domesticated Penelope-like retroelements Athena, concentrated at telomeric regions. Here we describe two LTR retrotransposons, each found at low copy number in a different bdelloid species, which define a clade different from previously known clades of LTR retrotransposons. Like bdelloid DNA transposons and Athena, these elements are found preferentially in telomeric regions. Unlike bdelloid DNA transposons, many of which are decayed, the newly described elements, named Vesta and Juno, inhabiting the genomes of Philodina roseola and Adineta vaga, respectively, appear to be intact and represent recent insertions, possibly from an exogenous source. We describe the retrovirus-like structure of the new elements, containing gag, pol, and env-like open reading frames, and discuss their possible origins, transmission, and behavior in bdelloid genomes.

Indexed as

RetroelementsAmino Acid SequenceAnimalsBase SequenceDNAFemaleGene DosageGenes, envGenes, gagGenes, polMaleMolecular Sequence DataPhylogenyRetroviridaeRotiferaSequence Homology, Amino AcidDNARetroelements

Identifiers

PMID17129685
PMCPMC1839950
OpenAlexW2048756840

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.