Evidence map›Paper›PMID 17128255›Full record

ArticleNature2006

Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease.

Corey R Mandel, Syuzo Kaneko, Hailong Zhang, Damara Gebauer, Vasupradha Vethantham, James L Manley, Liang Tong

Open access · greenAbstract read
In one paragraph

Article in Nature, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 271 papers.

0numbers the graph read from it
0cells of the map it votes in
271citing papers in PubMed
11.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

271 citing papers in PubMed, 458 citations in OpenAlex.

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211 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Corey R MandelDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Syuzo Kaneko
Hailong Zhang
Damara Gebauer
Vasupradha Vethantham
James L Manley
Liang Tong
Columbia University · USJohnson & Johnson (United States) · US

Funding

Structural biology of pre-mRNA 3'-end processingR01GM077175 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2007 to 2015
$2.8M
NIGMS NIH HHS R01 GM077175
6 · The paper itself

Abstract

Most eukaryotic messenger RNA precursors (pre-mRNAs) undergo extensive maturational processing, including cleavage and polyadenylation at the 3'-end. Despite the characterization of many proteins that are required for the cleavage reaction, the identity of the endonuclease is not known. Recent analyses indicated that the 73-kDa subunit of cleavage and polyadenylation specificity factor (CPSF-73) might be the endonuclease for this and related reactions, although no direct data confirmed this. Here we report the crystal structures of human CPSF-73 at 2.1 A resolution, complexed with zinc ions and a sulphate that might mimic the phosphate group of the substrate, and the related yeast protein CPSF-100 (Ydh1) at 2.5 A resolution. Both CPSF-73 and CPSF-100 contain two domains, a metallo-beta-lactamase domain and a novel beta-CASP (named for metallo-beta-lactamase, CPSF, Artemis, Snm1, Pso2) domain. The active site of CPSF-73, with two zinc ions, is located at the interface of the two domains. Purified recombinant CPSF-73 possesses RNA endonuclease activity, and mutations that disrupt zinc binding in the active site abolish this activity. Our studies provide the first direct experimental evidence that CPSF-73 is the pre-mRNA 3'-end-processing endonuclease.

Indexed as

Binding SitesCleavage And Polyadenylation Specificity FactorCrystallography, X-RayEndonucleasesHumansModels, MolecularmRNA Cleavage and Polyadenylation FactorsProtein Structure, TertiaryRNA, MessengerRNA PrecursorsSaccharomyces cerevisiae ProteinsCFT2 protein, S cerevisiaeCleavage And Polyadenylation Specificity FactorEndonucleasesmRNA Cleavage and Polyadenylation FactorsRNA, MessengerRNA PrecursorsSaccharomyces cerevisiae Proteins

Identifiers

PMID17128255
PMCPMC3866582
OpenAlexW2131824470

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.