Evidence map›Paper›PMID 17126526›Full record

ArticleGenomics2007

Allele-specific histone modifications regulate expression of the Dlk1-Gtl2 imprinted domain.

Michael S Carr, Aleksey Yevtodiyenko, Claudia L Schmidt, Jennifer V Schmidt

Open access · greenAbstract read
In one paragraph

Article in Genomics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 72 citations in OpenAlex.

  1. Article
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  5. Article
  6. The Dysregulation of theDiabetes · 2018
    Article
  7. A Hearty Dose of Noncoding RNAs: The ImprintedJournal of cardiovascular development and disease · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Michael S CarrDepartment of Biological Sciences, The University of Illinois at Chicago, 900 S. Ashland Avenue, MC 567, Chicago, IL 60607, USA.
Aleksey Yevtodiyenko
Claudia L Schmidt
Jennifer V Schmidt
University of Illinois Chicago · US

Funding

An Imprinted Gene Cluster on Mouse Chromosome 12R01HD042013 · NICHD · UNIVERSITY OF ILLINOIS AT CHICAGO · PI SCHMIDT, JENNIFER V · 2004 to 2008
$1.3M
NICHD NIH HHS HD042013NICHD NIH HHS R01 HD042013
6 · The paper itself

Abstract

Dlk1 and Gtl2 are reciprocally expressed imprinted genes located on mouse chromosome 12. The Dlk1-Gtl2 locus carries three differentially methylated regions (DMRs), which are methylated only on the paternal allele. Of these, the intergenic (IG) DMR, located 12 kb upstream of Gtl2, is required for proper imprinting of linked genes on the maternal chromosome, while the Gtl2 DMR, located across the promoter of the Gtl2 gene, is implicated in imprinting on both parental chromosomes. In addition to DNA methylation, modification of histone proteins is also an important regulator of imprinted gene expression. Chromatin immunoprecipitation was therefore used to examine the pattern of histone modifications across the IG and Gtl2 DMRs. The data show maternal-specific histone acetylation at the Gtl2 DMR, but not at the IG DMR. In contrast, only low levels of histone methylation were observed throughout the region, and there was no difference between the two parental alleles. An existing mouse line carrying a deletion/insertion upstream of Gtl2 is unable to imprint the Dlk1-Gtl2 locus properly and demonstrates loss of allele-specific methylation at the Gtl2 DMR. Further analysis of these animals now shows that the loss of allele-specific methylation is accompanied by increased paternal histone acetylation at the Gtl2 DMR, with the activated paternal allele adopting a maternal acetylation pattern. These data indicate that interactions between DNA methylation and histone acetylation are involved in regulating the imprinting of the Dlk1-Gtl2 locus.

Indexed as

Genomic ImprintingAcetylationAllelesAnimalsBase SequenceBinding SitesCalcium-Binding ProteinsCCCTC-Binding FactorDNADNA-Binding ProteinsDNA MethylationEnhancer Elements, GeneticFemaleHistonesIntercellular Signaling Peptides and ProteinsIntronsCalcium-Binding ProteinsCCCTC-Binding FactorCtcf protein, mouseDlk1 protein, mouseDNADNA-Binding ProteinsHistonesIntercellular Signaling Peptides and ProteinsMEG3 non-coding RNA, mouseProteinsRepressor ProteinsRNA, Long NoncodingYy1 protein, mouseYY1 Transcription Factor

Identifiers

PMID17126526
PMCPMC1802099
OpenAlexW2107989340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.