Evidence map›Paper›PMID 17123828›Full record

ArticleJournal of the American Society for Mass Spectrometry2007

Detection and identification of Bacteriovorax stolpii UKi2 Sphingophosphonolipid molecular species.

Koka Jayasimhulu, Shannon M Hunt, Edna S Kaneshiro, Yoko Watanabe, José-Luis Giner

Abstract read
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In one paragraph

Article in Journal of the American Society for Mass Spectrometry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Koka JayasimhuluDepartment of Biological Sciences, University of Cincinnati, Cincinnati, Ohio 45221-0006, USA.
Shannon M Hunt
Edna S Kaneshiro
Yoko Watanabe
José-Luis Giner
University of Cincinnati · USNiigata University · JPSUNY College of Environmental Science and Forestry · US

Funding

Sterol Metabolism in PneumocystisR01AI064084 · NIAID · UNIVERSITY OF CINCINNATI · PI KANESHIRO, EDNA SAYOMI · 2005 to 2009
$1.3M
HIGH PERFORMANCE QUADRUPOLE MS/MS SYSTEMS10RR013797 · NCRR · UNIVERSITY OF CINCINNATI · PI WARSHAWSKY, DAVID · 1999 to 1999
–
NCRR NIH HHS S10 RR013797-01NIAID NIH HHS R01 AI-064084
6 · The paper itself

Abstract

Bacteriovorax stolpii is a predator of larger gram-negative bacteria and lives as a parasite in the intraperiplasmic space of the host cell. This bacterium is unusual among prokaryotes in that sphingolipids comprise a large proportion of its lipids. We here report the presence of 18 molecular species of B. stolpii UKi2 sphingophosphonolipids (SPNLs). (31)P NMR spectroscopy and analysis of P(i) released by a differential hydrolysis protocol confirmed the phosphonyl nature of these lipids. The SPNLs were dominated by those with 1-hydroxy-2-aminoethane phosphonate (hydroxy-aminoethylphosphonate) polar head groups; aminoethylphosphonate was also detected in minor SPNL components. The long-chain bases (LCBs) were dominated by C(17) iso-branched phytosphingosine; C(17) iso-branched dihydrosphingosine was also present in some SPNLs. The N-linked fatty acids were predominantly iso-branched and most contained an alpha-hydroxy group (C(15) alpha-hydroxy fatty acid was the major fatty acid). Minor molecular species containing nonhydroxy fatty acids were also detected. The definitive iso-structures of the predominant fatty acids and LCBs present in the B. stolpii SPNLs were established using (13)C and (3)H nuclear magnetic resonance spectroscopy; less than 20% were unbranched. Detection and analyses of intact compounds by MS-MS were performed by a hybrid quadrupole time-of-flight (Q-TOF-II) MS equipped with an electrospray ionization source. Analyses of peracetylated derivatives verified the structural assignments of these lipids.

Indexed as

BdellovibrioChromatography, Thin LayerHydrolysisMass SpectrometryMolecular StructureNuclear Magnetic Resonance, BiomolecularPhospholipidsSpectrometry, Mass, Electrospray IonizationSphingolipidsPhospholipidsSphingolipids

Identifiers

PMID17123828
OpenAlexW1972683541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.