Evidence map›Paper›PMID 17121823›Full record

ArticleThe Journal of biological chemistry2007

Structural characterization of the active site of the PduO-type ATP:Co(I)rrinoid adenosyltransferase from Lactobacillus reuteri.

Martin St Maurice, Paola E Mera, María P Taranto, Fernando Sesma, Jorge C Escalante-Semerena, Ivan Rayment

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  7. Diverse bacterial microcompartment organelles.Microbiology and molecular biology reviews : MMBR · 2014
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  20. Crystallization and preliminary X-ray crystallographic studies of a PduO-type ATP:cob(I)alamin adenosyltransferase from Bacillus cereus.Acta crystallographica. Section F, Structural biology and crystallization communications · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Martin St MauriceDepartment of Biochemistry, University of Wisconsin, Madison, Wisconsin 53706, USA.
Paola E Mera
María P Taranto
Fernando Sesma
Jorge C Escalante-Semerena
Ivan Rayment
University of Wisconsin–Madison · USConsejo Nacional de Investigaciones Científicas y Técnicas · AR

Funding

Chemistry-Biology Interface Training ProgramT32GM008505 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BLACKWELL, HELEN E. · 1993 to 2023
$9.8M
Request for a supplement for equipmentR37GM040313 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ESCALANTE, JORGE C · 2010 to 2018
$3.5M
X-RAY DIFFRACTION STUDIES ON MYOSIN SUBFRAGMENT-1R01AR035186 · NIAMS · UNIVERSITY OF WISCONSIN-MADISON · PI RAYMENT, IVAN · 1986 to 2007
$3.2M
B12 Biosysthesis and Anaerobic Metabolism in SalmonellaR01GM040313 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ESCALANTE, JORGE C · 1988 to 2009
$3.0M
NIAMS NIH HHS AR35186NIAMS NIH HHS R01 AR035186NIGMS NIH HHS GM40313NIGMS NIH HHS R01 GM040313NIGMS NIH HHS R37 GM040313NIGMS NIH HHS T32 GM008505-13
6 · The paper itself

Abstract

The three-dimensional crystal structure of the PduO-type corrinoid adenosyltransferase from Lactobacillus reuteri (LrPduO) has been solved to 1.68-A resolution. The functional assignment of LrPduO as a corrinoid adenosyltransferase was confirmed by in vivo and in vitro evidence. The enzyme has an apparent Km(ATP) of 2.2 microM and Km(Cobalamin) of 0.13 microM and a kcat of 0.025 s(-1). Co-crystallization of the enzyme with Mg-ATP resulted in well-defined electron density for an N-terminal loop that had been disordered in other PduO-type enzyme structures. This newly defined N-terminal loop makes up the lower portion of the enzyme active site with the other half being contributed from an adjacent subunit. These results provide the first detailed description of the enzyme active site for a PduO-type adenosyltransferase and identify a unique ATP binding motif at the protein N terminus. The molecular architecture at the active site offers valuable new insight into the role of various residues responsible for the human disease methylmalonic aciduria.

Indexed as

Alkyl and Aryl TransferasesAmino Acid SequenceBacterial ProteinsBinding SitesLimosilactobacillus reuteriModels, MolecularMolecular Sequence DataProtein ConformationSequence AlignmentStatic ElectricityStructure-Activity RelationshipSubstrate SpecificityAlkyl and Aryl TransferasesATP-corrinoid adenosyltransferaseBacterial Proteins

Identifiers

PMID17121823
PMCPMC6574208
OpenAlexW2076736170

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.