Evidence map›Paper›PMID 17121806›Full record

ArticleJournal of virology2007

Type-specific epitopes targeted by monoclonal antibodies with exceptionally potent neutralizing activities for selected strains of human immunodeficiency virus type 1 map to a common region of the V2 domain of gp120 and differ only at single positions from the clade B consensus sequence.

W J Honnen, C Krachmarov, S C Kayman, M K Gorny, S Zolla-Pazner, A Pinter

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 66 citations in OpenAlex.

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  11. Germline-targeting immunogens.Immunological reviews · 2017
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

W J HonnenPublic Health Research Institute, UMDNJ, 255 Warren Street, Newark, NJ 07103-3535, USA.
C Krachmarov
S C Kayman
M K Gorny
S Zolla-Pazner
A Pinter
University Hospital, Newark · USIndiana University School of MedicineInternational Center for Public Health · US

Funding

VIROLOGY COREP30AI027742 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1989 to 2010
$19.4M
PROTECTIVE HUMAN MONOCLONAL ANTIBODIES TO HIV1R01HL059725 · NHLBI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1997 to 2014
$8.8M
IMMUNOLOGIC RELATEDNESS AMONG AND BETWEEN HIV-1 SUBTYPESR01AI036085 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZOLLA-PAZNER, SUSAN B · 1994 to 2008
$5.3M
ANTIGENIC PROPERTIES OF THE V1/V2 DOMAIN OF HIV-1 GP120R01AI046283 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2000 to 2010
$5.1M
EVOLUTION AND PROPERTIES OF HIV/SIV STRAINS IN CAMEROONR01AI047053 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NYAMBI, PHILLIPE N · 2000 to 2003
$2.6M
Novel HIV Neutralizing Human MAbs from Transgenic MiceR01AI050452 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI PINTER, ABRAHAM · 2002 to 2006
$1.9M
Antigenic properties of the V1/V2 domain of HIV-1 gp120R56AI046283 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI PINTER, ABRAHAM · 2005 to 2005
$493k
ANTIGENIC PROPERTIES OF THE V1/V2 DOMAIN OF HIV-1 GP120R21AI046283 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI PINTER, ABRAHAM · 2000 to 2000
$111k
NHLBI NIH HHS HL59725NHLBI NIH HHS R01 HL059725NIAID NIH HHS AI27742NIAID NIH HHS AI36085NIAID NIH HHS AI46283NIAID NIH HHS AI47053NIAID NIH HHS AI50452NIAID NIH HHS P30 AI027742NIAID NIH HHS R01 AI036085NIAID NIH HHS R01 AI046283NIAID NIH HHS R01 AI047053NIAID NIH HHS R01 AI050452NIAID NIH HHS R21 AI046283NIAID NIH HHS R56 AI046283
6 · The paper itself

Abstract

Only a few monoclonal antibodies (MAbs) have been isolated that recognize conserved sites in human immunodeficiency virus type 1 (HIV-1) Env proteins and possess broad neutralizing activities. Other MAbs directed against targets in various domains of Env have been described that are strongly neutralizing, but they possess limited breadth. One such MAb, 2909, possesses a uniquely potent neutralizing activity specific for a quaternary epitope on SF162 Env that requires the presence of both the V2 and the V3 domains. We now show that replacement of the SF162 V3 sequence with consensus V3 sequences of multiple subtypes led to attenuated but still potent neutralization by 2909 and that the main determinants for the type specificity of 2909 reside in the V2 domain. A substitution at position 160 completely eliminated 2909 reactivity, and mutations at position 167 either attenuated or potentiated neutralization by this antibody. Different substitutions at the same positions in V2 were previously shown to introduce epitopes recognized by MAbs 10/76b and C108g and to allow potent neutralization by these MAbs. Two substitutions at key positions in the V2 domain of JR-FL Env also allowed potent expression of the 2909 epitope, and single substitutions in YU2 V2 were sufficient for expression of the 2909, C108g, and 10/76b epitopes. These results demonstrate that the minimal epitopes for 2909, C108g, and 10/76b differed from that of the clade B consensus sequence only at single positions and suggest that all three MAbs recognize distinct variants of a relatively conserved sequence in V2 that is a particularly sensitive mediator of HIV-1 neutralization.

Indexed as

AnimalsAntibodies, MonoclonalAntibody SpecificityEpitopesHIV-1HIV AntibodiesHIV Envelope Protein gp120HumansNeutralization TestsPan troglodytesPeptide FragmentsProtein BindingProtein PrecursorsSpecies SpecificityAntibodies, MonoclonalEpitopesHIV AntibodiesHIV Envelope Protein gp120Peptide FragmentsProtein Precursors

Identifiers

PMID17121806
PMCPMC1797533
OpenAlexW1966809129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.