Evidence map›Paper›PMID 17119950›Full record

ArticleImmunogenetics2007

Two critical genes (HLA-DRB1 and ABCF1)in the HLA region are associated with the susceptibility to autoimmune pancreatitis.

Masao Ota, Yoshihiko Katsuyama, Hideaki Hamano, Takeji Umemura, Akinori Kimura, Kaname Yoshizawa, Kendo Kiyosawa, Hirofumi Fukushima, Seiamak Bahram, Hidetoshi Inoko and 1 more

Abstract read
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Article in Immunogenetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 122 citations in OpenAlex.

  1. Review
  2. DNA Sensor ABCF1 Phase Separates With cccDNA to Inhibit Hepatitis B Virus Replication.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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  7. IgG4-related diseases of the digestive tract.Nature reviews. Gastroenterology & hepatology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Masao OtaDepartment of Legal Medicine, Shinshu University School of Medicine, 3-1-1 Asahi, Matsumoto 390-8621, Japan. otamasao@sch.md.shinshu-u.ac.jp
Yoshihiko Katsuyama
Hideaki Hamano
Takeji Umemura
Akinori Kimura
Kaname Yoshizawa
Kendo Kiyosawa
Hirofumi Fukushima
Seiamak Bahram
Hidetoshi Inoko
Shigeyuki Kawa
Shinshu University · JPImmunologie, Immunopathologie et Chimie Thérapeutique · FRTokai University · JPTokyo Medical and Dental University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We have previously reported that autoimmune pancreatitis (AIP) is a bioclinical entity characterized by high serum immunoglobulin G4 concentrations and association with the HLA-DRB1*0405-DQB1*0401 haplotype. However, the precise identity of gene(s) within this haplotype directly responsible for AIP pathogenesis is yet to be established. To dissect the genetic contribution of the incriminated haplotype, we have now performed an association analysis within the human leukocyte antigen (HLA) region using various types of polymorphic markers. Genomic DNAs from 43 AIP patients and 213 unrelated Japanese controls were used in this analysis. In each DNA sample, we established the genotype of 25 microsatellite markers distributed throughout the HLA region, that of single nucleotide polymorphism within the 5'-flanking regions of the TNFA and IkBLI (also known as NFKBIL1) as well as HLA class I and II genes. The HLA-linked susceptibility regions for AIP were localized to two segments: HLA-DRB1 (*0405; OR = 3.20, P = 0.00063, Pc = 0.0016) -DQB1 (*0401; OR = 3.29, P = 0.00046, Pc = 0.0069) in the HLA class II and C3-2-11 microsatellite (allele 219; OR = 2.96, P = 0.0076, Pc = 0.099) in the HLA class I regions. Upon stratification analysis in search for a synergistic effect given the extensive linkage disequilibrium within the major histocompatibility complex, it was established that each segment contributed to disease pathogenesis. The two critical HLA regions for susceptibility to AIP are limited to the HLA-DRB1*0405-DQB1*0401 in the class II and the ABCF1 proximal to C3-2-11, telomeric of HLA-E, in the class I regions.

Indexed as

Genetic Predisposition to DiseaseAdaptor Proteins, Signal TransducingAsian PeopleATP-Binding Cassette TransportersAutoimmune DiseasesCase-Control StudiesGenes, MHC Class IIHaplotypesHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA-DR AntigensHLA-DRB1 ChainsHumansMicrosatellite RepeatsPancreatitisPolymorphism, GeneticABCF1 protein, humanAdaptor Proteins, Signal TransducingATP-Binding Cassette TransportersHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHLA-DR AntigensHLA-DRB1 ChainsNFKBIL1 protein, humanTumor Necrosis Factor-alpha

Identifiers

PMID17119950
OpenAlexW2085620318

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.