Evidence map›Paper›PMID 17116750›Full record

ArticleThe Journal of cell biology2006

Simple kinetic relationships and nonspecific competition govern nuclear import rates in vivo.

Benjamin L Timney, Jaclyn Tetenbaum-Novatt, Diana S Agate, Rosemary Williams, Wenzhu Zhang, Brian T Chait, Michael P Rout

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 145 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Self-regulation of the nuclear pore complex enables clogging-free crowded transport.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Karyopherin-mediated nucleocytoplasmic transport.Nature reviews. Molecular cell biology · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Modeling the transport of nuclear proteins along single skeletal muscle cells.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Benjamin L TimneyLaboratory of Cellular and Structural Biology and Laboratory of Gaseous Ion Chemistry, Rockefeller University, New York, NY 10021, USA.
Jaclyn Tetenbaum-Novatt
Diana S Agate
Rosemary Williams
Wenzhu Zhang
Brian T Chait
Michael P Rout
Rockefeller University · US

Funding

YNG1 PHD BINDING TO H3 3METHYL AT K4 PROMOTES TRANSCRIPTION AT TARGETED ORFSP41RR000862 · NCRR · ROCKEFELLER UNIVERSITY · PI DARNELL, JAMES E · 1985 to 2011
$16.1M
Virtual Gating Machines for Protein PurificationR01GM071329 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2004 to 2013
$4.6M
DISSECTING THE MOLECULAR MACHINERY OF NUCLEAR TRANSPORTR01GM062427 · NIGMS · ROCKEFELLER UNIVERSITY · PI ROUT, MICHAEL P · 2001 to 2010
$2.7M
NCRR NIH HHS P41 RR000862NCRR NIH HHS RR00862NIGMS NIH HHS GM062427NIGMS NIH HHS GM071329NIGMS NIH HHS R01 GM062427NIGMS NIH HHS R01 GM071329
6 · The paper itself

Abstract

Many cargoes destined for nuclear import carry nuclear localization signals that are recognized by karyopherins (Kaps). We present methods to quantitate import rates and measure Kap and cargo concentrations in single yeast cells in vivo, providing new insights into import kinetics. By systematically manipulating the amounts, types, and affinities of Kaps and cargos, we show that import rates in vivo are simply governed by the concentrations of Kaps and their cargo and the affinity between them. These rates fit to a straightforward pump-leak model for the import process. Unexpectedly, we deduced that the main limiting factor for import is the poor ability of Kaps and cargos to find each other in the cytoplasm in a background of overwhelming nonspecific competition, rather than other more obvious candidates such as the nuclear pore complex and Ran. It is likely that most of every import round is taken up by Kaps and nuclear localization signals sampling other cytoplasmic proteins as they locate each other in the cytoplasm.

Indexed as

Active Transport, Cell NucleusAmino Acid Sequencebeta KaryopherinsCarrier ProteinsCell NucleusGene ExpressionKaryopherinsKineticsMembrane Transport ProteinsModels, BiologicalMolecular Sequence DataNuclear Localization SignalsNuclear PoreProtein BindingReceptors, Cytoplasmic and NuclearRecombinant Fusion Proteinsbeta KaryopherinsCarrier ProteinsKAP104 protein, S cerevisiaeKap123 protein, S cerevisiaeKaryopherinsMembrane Transport ProteinsNuclear Localization SignalsPSE1 protein, S cerevisiaeReceptors, Cytoplasmic and NuclearRecombinant Fusion Proteinsribosomal protein L25Ribosomal ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID17116750
PMCPMC2064595
OpenAlexW2132252257

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.