Evidence map›Paper›PMID 17116695›Full record

ArticleMolecular and cellular biology2007

Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans.

Andreas Bernreiter, Ana Ramon, Javier Fernández-Martínez, Harald Berger, Lidia Araújo-Bazan, Eduardo A Espeso, Robert Pachlinger, Andreas Gallmetzer, Ingund Anderl, Claudio Scazzocchio and 1 more

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 77 citations in OpenAlex.

  1. Regulation of nutrient utilization in filamentous fungi.Applied microbiology and biotechnology · 2023
    Review
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  9. Nitrate Assimilation inFrontiers in microbiology · 2017
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  11. Article
  12. Review
  13. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Andreas BernreiterFungal Genetics and Genomics Unit, Austrian Research Centers and BOKU Vienna, Muthgasse 18, A-1190 Vienna, Austria.
Ana Ramon
Javier Fernández-Martínez
Harald Berger
Lidia Araújo-Bazan
Eduardo A Espeso
Robert Pachlinger
Andreas Gallmetzer
Ingund Anderl
Claudio Scazzocchio
Joseph Strauss
Austrian Institute of Technology · ATCentro de Investigaciones Biológicas Margarita Salas · ESUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NirA, the specific transcription factor of the nitrate assimilation pathway of Aspergillus nidulans, accumulates in the nucleus upon induction by nitrate. NirA interacts with the nuclear export factor KapK, which bridges an interaction with a protein of the nucleoporin-like family (NplA). Nitrate induction disrupts the NirA-KapK interaction in vivo, whereas KapK associates with NirA when this protein is exported from the nucleus. A KpaK leptomycin-sensitive mutation leads to inducer-independent NirA nuclear accumulation in the presence of the drug. However, this does not lead to constitutive expression of the genes controlled by NirA. A nirA(c)1 mutation leads to constitutive nuclear localization and activity, remodeling of chromatin, and in vivo binding to a NirA upstream activation sequence. The nirA(c)1 mutation maps in the nuclear export signal (NES) of the NirA protein. The NirA-KapK interaction is nearly abolished in NirA(c)1 and NirA proteins mutated in canonical leucine residues in the NirA NES. The latter do not result in constitutively active NirA protein, which implies that nuclear retention is necessary but not sufficient for NirA activity. The results are consistent with a model in which activation of NirA by nitrate disrupts the interaction of NirA with the NplA/KapK nuclear export complex, thus resulting in nuclear retention, leading to AreA-facilitated DNA binding of the NirA protein and subsequent chromatin remodeling and transcriptional activation.

Indexed as

Active Transport, Cell NucleusAspergillus nidulansBinding SitesCell NucleusExportin 1 ProteinFatty Acids, UnsaturatedFungal ProteinsGene Expression Regulation, FungalKaryopherinsMutationNitratesNuclear Export SignalsNuclear Pore Complex ProteinsPhenotypeProtein BindingReceptors, Cytoplasmic and NuclearExportin 1 ProteinFatty Acids, UnsaturatedFungal ProteinsKaryopherinsleptomycin BNirA protein, Aspergillus nidulansNitratesNuclear Export SignalsNuclear Pore Complex ProteinsReceptors, Cytoplasmic and NuclearRecombinant Fusion ProteinsRNA, MessengerTranscription Factors

Identifiers

PMID17116695
PMCPMC1800680
OpenAlexW2136124050

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.