ArticleGenome biology2006
xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features.
Article in Genome biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
10 citing papers in PubMed.
- xGDBvm: A Web GUI-Driven Workflow for Annotating Eukaryotic Genomes in the Cloud.The Plant cell · 2016Article
- Extensive error in the number of genes inferred from draft genome assemblies.PLoS computational biology · 2014Article
- Article
- Genome Maps, a new generation genome browser.Nucleic acids research · 2013Article
- The protein translocation systems in plants - composition and variability on the example of Solanum lycopersicum.BMC genomics · 2013Article
- Choosing a genome browser for a Model Organism Database: surveying the maize community.Database : the journal of biological databases and curation · 2010Article
- MaizeGDB becomes 'sequence-centric'.Database : the journal of biological databases and curation · 2009Article
- PlantGDB: a resource for comparative plant genomics.Nucleic acids research · 2008Article
- Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.BMC genomics · 2007Article
- Manual curation is not sufficient for annotation of genomic databases.Bioinformatics (Oxford, England) · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The eXtensible Genome Data Broker (xGDB) provides a software infrastructure consisting of integrated tools for the storage, display, and analysis of genome features in their genomic context. Common features include gene structure annotations, spliced alignments, mapping of repetitive sequence, and microarray probes, but the software supports inclusion of any property that can be associated with a genomic location. The xGDB distribution and user support utilities are available online at the xGDB project website, http://xgdb.sourceforge.net/.
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Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.