Evidence map›Paper›PMID 17115186›Full record

ArticleHuman genetics2007

TagSNP evaluation for the association of 42 inflammation loci and vascular disease: evidence of IL6, FGB, ALOX5, NFKBIA, and IL4R loci effects.

Christopher S Carlson, Patrick J Heagerty, Alex S Nord, David K Pritchard, Jane Ranchalis, Joshua M Boguch, Hangjun Duan, Thomas S Hatsukami, Stephen M Schwartz, Mark J Rieder and 2 more

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
  5. Article
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  11. Review
  12. Polymorphisms of genes in the lipid metabolism pathway and risk of biliary tract cancers and stones: a population-based case-control study in Shanghai, China.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2008
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Christopher S CarlsonDivision of Public Health Sciences, The Fred Hutchinson Cancer Research Center, The University of Washington, Seattle, WA, USA.
Patrick J Heagerty
Alex S Nord
David K Pritchard
Jane Ranchalis
Joshua M Boguch
Hangjun Duan
Thomas S Hatsukami
Stephen M Schwartz
Mark J Rieder
Deborah A Nickerson
Gail P Jarvik
University of Washington · USUniversity of Washington Medical Center · USVA Puget Sound Health Care System · US

Funding

UW-FHCRC VARIATION DISCOVERY RESOURCEU01HL066682 · NHLBI · UNIVERSITY OF WASHINGTON · PI NICKERSON, DEBORAH A · 2000 to 2007
$19.1M
Neovasculature, Plaque Rupture And Progression by MRIP01HL072262 · NHLBI · UNIVERSITY OF WASHINGTON · PI SCHWARTZ, STEPHEN MARK · 2002 to 2006
$11.5M
Prediction and Progression of Carotid Artery DiseaseR01HL067406 · NHLBI · UNIVERSITY OF WASHINGTON · PI JARVIK, GAIL PAIRITZ · 2002 to 2009
$5.1M
Inflammatory Genomics in Human Carotid Artery DiseaseR01HL074366 · NHLBI · UNIVERSITY OF WASHINGTON · PI JARVIK, GAIL PAIRITZ · 2003 to 2006
$2.9M
Magnetic Resonance Imaging of Vulnerable PlaqueR01HL073401 · NHLBI · UNIVERSITY OF WASHINGTON · PI HATSUKAMI, THOMAS · 2003 to 2006
$2.3M
NHLBI NIH HHS P01 HL072262NHLBI NIH HHS R01 HL073401NHLBI NIH HHS R01 HL074366NHLBI NIH HHS R01HL67406NHLBI NIH HHS U01 HL66682
6 · The paper itself

Abstract

Inflammatory markers have consistently been associated with vascular disease. Evidence of genetic polymorphisms in inflammatory loci that predict severe carotid artery disease (CAAD) would suggest that this relationship is not secondary to other correlated factors, but related to inflammation itself. We examined the full common genetic variation in 42 inflammatory loci for prediction of severe CAAD versus ultrasound proven controls using a tagSNP approach. For selected loci, monocyte RNA levels were contrasted in subjects with and without CAAD. We confirm the association of IL6(-174), FGB (-455), and ALOX5 with CAAD and show that multiple ALOX5 SNPs independently predict CAAD. We provide evidence for previously unreported associations of SNPs in IL4R, NFKBIA, and PLG with CAAD, and weaker evidence for associations with CSF3, IL10RA, and VCAM1. The NFKBIA and IL10RA expression levels significantly differed between subjects with CAAD and controls. These results support a role for genetic variation related to inflammation in CAAD and a causal role for specific gene products.

Indexed as

Genetic MarkersGenetic Predisposition to DiseasePolymorphism, Single NucleotideAgedAged, 80 and overArachidonate 5-LipoxygenaseCarotid StenosisCase-Control StudiesDNA-Binding ProteinsFemaleFibrinogenHumansI-kappa B ProteinsInflammationInterleukin-6Longitudinal StudiesArachidonate 5-LipoxygenaseDNA-Binding ProteinsFibrinogenGenetic MarkersI-kappa B ProteinsInterleukin-6NF-KappaB Inhibitor alphaNFKBIA protein, humanReceptors, Interleukin-4

Identifiers

PMID17115186
OpenAlexW2036634442

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.