Evidence map›Paper›PMID 17115055›Full record

ArticleNature biotechnology2006

The genome and transcriptomes of the anti-tumor agent Clostridium novyi-NT.

Chetan Bettegowda, Xin Huang, Jimmy Lin, Ian Cheong, Manu Kohli, Stephen A Szabo, Xiaosong Zhang, Luis A Diaz, Victor E Velculescu, Giovanni Parmigiani and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 80 papers.

0numbers the graph read from it
0cells of the map it votes in
80citing papers in PubMed
9.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

80 citing papers in PubMed, 156 citations in OpenAlex.

  1. Review
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  8. Designing live bacterial therapeutics for cancer.Advanced drug delivery reviews · 2025
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  12. Review
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  16. Hypoxia-targeting bacteria in cancer therapy.Seminars in cancer biology · 2024
    Review
  17. Bacteria-Based Nanoprobes for Cancer Therapy.International journal of nanomedicine · 2024
    Review
  18. Article
  19. Review
  20. Bacterial-Mediated Tumor Therapy: Old Treatment in a New Context.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Review

20 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Chetan BettegowdaThe Howard Hughes Medical Institute, The Ludwig Center for Cancer Genetics & Therapeutics, The Sidney Kimmel Comprehensive Cancer Center, Department of Pharmacology and Molecular Sciences, Johns Hopkins Medical Institutions, Baltimore, Maryland 21231, USA.
Xin Huang
Jimmy Lin
Ian Cheong
Manu Kohli
Stephen A Szabo
Xiaosong Zhang
Luis A Diaz
Victor E Velculescu
Giovanni Parmigiani
Kenneth W Kinzler
Bert Vogelstein
Shibin Zhou
Sidney Kimmel Comprehensive Cancer Center · USJohns Hopkins University · USCancer Genetics (United States) · USHoward Hughes Medical Institute · US

Funding

Tumor Antigens for Individual Signatures and TherapyP50CA062924 · NCI · JOHNS HOPKINS UNIVERSITY · PI JAFFEE, ELIZABETH M. · 1993 to 2022
$54.6M
NCI NIH HHS CA062924NCI NIH HHS P50 CA062924
6 · The paper itself

Abstract

Bacteriolytic anti-cancer therapies employ attenuated bacterial strains that selectively proliferate within tumors. Clostridium novyi-NT spores represent one of the most promising of these agents, as they generate potent anti-tumor effects in experimental animals. We have determined the 2.55-Mb genomic sequence of C. novyi-NT, identifying a new type of transposition and 139 genes that do not have homologs in other bacteria. The genomic sequence was used to facilitate the detection of transcripts expressed at various stages of the life cycle of this bacterium in vitro as well as in infections of tumors in vivo. Through this analysis, we found that C. novyi-NT spores contained mRNA and that the spore transcripts were distinct from those in vegetative forms of the bacterium.

Indexed as

Genomic LibraryAnimalsClostridiumDisease Models, AnimalGene Expression ProfilingGenome, BacterialHumansMiceMice, Inbred BALB CMolecular Sequence DataNeoplasmsRNA, RibosomalSpores, BacterialTranscription, GeneticRNA, Ribosomal

Identifiers

PMID17115055
PMCPMC9338427
OpenAlexW1991403565

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.