Evidence map›Paper›PMID 17114233›Full record

ArticleBiophysical journal2007

Ion conduction through MscS as determined by electrophysiology and simulation.

Marcos Sotomayor, Valeria Vásquez, Eduardo Perozo, Klaus Schulten

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 121 citations in OpenAlex.

  1. Review
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  15. Close encounters with DNA.Journal of physics. Condensed matter : an Institute of Physics journal · 2014
    Review
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  20. Review

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Marcos SotomayorDepartment of Physics, University of Illinois at Urbana-Champaign, and Beckman Institute for Advanced Science and Technology, Urbana, Illinois, USA.
Valeria Vásquez
Eduardo Perozo
Klaus Schulten
University of Illinois Urbana-Champaign · USUniversity of Chicago · USUniversity of Virginia · US

Funding

WHOLE CELL SIMULATIONP41RR005969 · NCRR · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI STONE, JOHN H · 1990 to 2011
$19.8M
System-Level Simulation of a Bioenergetic MembraneR01GM067887 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI TAJKHORSHID, EMAD · 2003 to 2018
$4.0M
Structural Dynamics of Mechanosensitive ChannelsR01GM063617 · NIGMS · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI PEROZO, EDUARDO A · 2001 to 2008
$2.1M
NCRR NIH HHS P41 RR005969NIGMS NIH HHS 1 R01 GM067887NIGMS NIH HHS GM063617NIGMS NIH HHS R01 GM063617NIGMS NIH HHS R01 GM067887
6 · The paper itself

Abstract

The mechanosensitive channel of small conductance (MscS) is a membrane protein thought to act as a safety valve in bacteria, regulating the release of ions and small solutes when gated by membrane tension under challenging osmotic conditions. The influence of voltage on channel activation and the functional state depicted by the available crystal structure of MscS remain debated. Therefore, in an effort to relate electrophysiological measurements on MscS and properties of the MscS crystal conformation, we report here MscS's response to voltage and pressure as determined by patch-clamp experiments, as well as MscS electrostatics and transport properties as determined through all-atom molecular dynamics simulations of the protein embedded in a lipid bilayer, a 224,000-atom system. The experiments reveal that MscS is a slightly anion-selective channel with a conductance of approximately 1 ns, activated by pressure and inactivated in a voltage-dependent manner. On the other hand, the simulations, covering over 200 ns and including biasing electrostatic potentials, show that MscS restrained to the crystal conformation exhibits low conductance; unrestrained it increases the channel radius upon application of a large electrostatic bias and exhibits then ion conduction that matches experimentally determined conductances. The simulated conductance stems mainly from Cl- ions.

Indexed as

Models, BiologicalModels, ChemicalCell MembraneEscherichia coli ProteinsIon Channel GatingIon ChannelsIonsLipid BilayersMembrane PotentialsModels, MolecularPatch-Clamp TechniquesPressureProtein ConformationEscherichia coli ProteinsIon ChannelsIonsLipid BilayersMscS protein, E coli

Identifiers

PMID17114233
PMCPMC1779981
OpenAlexW2039816451

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.