Evidence map›Paper›PMID 17114178›Full record

ArticleThe Journal of biological chemistry2007

Purification and identification of proteins that bind to the hereditary persistence of fetal hemoglobin -198 mutation in the gamma-globin gene promoter.

Ivan A Olave, Catalin Doneanu, Xiangdong Fang, George Stamatoyannopoulos, Qiliang Li

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. What influences Hb fetal production in adulthood?Revista brasileira de hematologia e hemoterapia · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ivan A OlaveDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle 98195, USA.
Catalin Doneanu
Xiangdong Fang
George Stamatoyannopoulos
Qiliang Li
University of Washington Medical Center · USUniversity of Washington · US

Funding

MOLECULAR CONTROL OF GLOBIN GENE SWITCHINGR37DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1998 to 2006
$3.8M
Molecular Mechanism of Human g-Globin Gene SilencingR01HL073439 · NHLBI · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2003 to 2011
$2.8M
MOLECULAR CONTROL OF HUMAN GLOBIN GENE SWITCHINGR01DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1992 to 2011
$1.6M
Mechanism of Gamma-Globin Gene Activation in the AdultR01DK061805 · NIDDK · UNIVERSITY OF WASHINGTON · PI LI, QILIANG · 2001 to 2004
$1.5M
Globin Gene Switching: Molecular ControlR56DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 2007 to 2007
$78k
NHLBI NIH HHS HL73439NHLBI NIH HHS R01 HL073439NIDDK NIH HHS DK45365NIDDK NIH HHS DK61805NIDDK NIH HHS R01 DK045365NIDDK NIH HHS R01 DK061805NIDDK NIH HHS R37 DK045365NIDDK NIH HHS R56 DK045365
6 · The paper itself

Abstract

Expression of the gamma-globin gene is silenced in adult humans. However, certain point mutations in the gamma-globin gene promoter are capable of maintaining expression of this gene during adult erythropoiesis, a condition called non-deletion hereditary persistence of fetal hemoglobin (HPFH). Among these, the British form of HPFH carrying a T-->C point mutation at position -198 of the Agamma-globin gene promoter results in 4-10% fetal hemoglobin in heterozygotes. In this study, we used nuclear extracts from murine erythroleukemia cells to purify a protein complex that binds the HPFH -198 gamma-globin gene promoter. Members of this protein complex were identified by mass spectrometry and include DNMT1, the transcriptional coactivator p52, the protein SNEV, and RAP74 (the largest subunit of the general transcription factor IIF). Sp1, which was previously considered responsible for HPFH -198 gamma-globin gene activation, was not identified. The potential role of these proteins in the reactivation and/or maintenance of gamma-globin gene expression in the adult transcriptional environment is discussed.

Indexed as

Gene Expression Regulation, DevelopmentalAdultAnimalsAntibody SpecificityBlotting, WesternCell FractionationCell Line, TumorChromatography, AffinityDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesFetal HemoglobinGlobinsHumansLeukemia, Erythroblastic, AcuteMass SpectrometryMiceDNA (Cytosine-5-)-Methyltransferase 1DNA (Cytosine-5-)-MethyltransferasesDNMT1 protein, humanDnmt1 protein, mouseFetal HemoglobinGlobinsNuclear Matrix-Associated ProteinsSp1 Transcription FactorTranscription FactorsTranscription Factors, TFIItranscription factor TFIIF

Identifiers

PMID17114178
PMCPMC2819221
OpenAlexW2061991256

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.