Evidence map›Paper›PMID 17111047›Full record

ArticleThe Journal of clinical investigation2006

Functional validation of the anaplastic lymphoma kinase signature identifies CEBPB and BCL2A1 as critical target genes.

Roberto Piva, Elisa Pellegrino, Michela Mattioli, Luca Agnelli, Luigia Lombardi, Francesco Boccalatte, Giulia Costa, Bruce A Ruggeri, Mangeng Cheng, Roberto Chiarle and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 164 citations in OpenAlex.

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  20. Non-canonical roles of canonical telomere binding proteins in cancers.Cellular and molecular life sciences : CMLS · 2021
    Review

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Roberto PivaDepartment of Pathology and Center for Experimental Research and Medical Studies (CeRMS), University of Turin, Turin, Italy. roberto.piva@unito.it
Elisa Pellegrino
Michela Mattioli
Luca Agnelli
Luigia Lombardi
Francesco Boccalatte
Giulia Costa
Bruce A Ruggeri
Mangeng Cheng
Roberto Chiarle
Giorgio Palestro
Antonino Neri
Giorgio Inghirami
University of Turin · ITFondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico · ITUniversity of Milan · ITWest Chester University · US

Funding

NCI NIH HHS R01-CA64033
6 · The paper itself

Abstract

Anaplastic large cell lymphomas (ALCLs) represent a subset of lymphomas in which the anaplastic lymphoma kinase (ALK) gene is frequently fused to the nucleophosmin (NPM) gene. We previously demonstrated that the constitutive phosphorylation of ALK chimeric proteins is sufficient to induce cellular transformation in vitro and in vivo and that ALK activity is strictly required for the survival of ALK-positive ALCL cells. To elucidate the signaling pathways required for ALK-mediated transformation and tumor maintenance, we analyzed the transcriptomes of multiple ALK-positive ALCL cell lines, abrogating their ALK-mediated signaling by inducible ALK RNA interference (RNAi) or with potent and cell-permeable ALK inhibitors. Transcripts derived from the gene expression profiling (GEP) analysis uncovered a reproducible signature, which included a novel group of ALK-regulated genes. Functional RNAi screening on a set of these ALK transcriptional targets revealed that the transcription factor C/EBPbeta and the antiapoptotic protein BCL2A1 are absolutely necessary to induce cell transformation and/or to sustain the growth and survival of ALK-positive ALCL cells. Thus, we proved that an experimentally controlled and functionally validated GEP analysis represents a powerful tool to identify novel pathogenetic networks and validate biologically suitable target genes for therapeutic interventions.

Indexed as

RNA InterferenceAnaplastic Lymphoma KinaseAnimalsApoptosisCCAAT-Enhancer-Binding Protein-betaCell CycleCell LineCell SurvivalCell Transformation, NeoplasticFlow CytometryGene Expression ProfilingHumansLymphoma, Large B-Cell, DiffuseMiceMinor Histocompatibility AntigensNeoplasmsALK protein, humanAlk protein, mouseAnaplastic Lymphoma KinaseBCL2-related protein A1CCAAT-Enhancer-Binding Protein-betaMinor Histocompatibility AntigensNPM1 protein, humanNuclear ProteinsNucleophosminProtein-Tyrosine KinasesProto-Oncogene Proteins c-bcl-2Receptor Protein-Tyrosine KinasesSTAT3 Transcription Factor

Identifiers

PMID17111047
PMCPMC1636692
OpenAlexW2144566097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.