Evidence map›Paper›PMID 17110927›Full record

ArticleThe EMBO journal2006

Structural mechanism of RPA loading on DNA during activation of a simple pre-replication complex.

Xiaohua Jiang, Vitaly Klimovich, Alphonse I Arunkumar, Erik B Hysinger, Yingda Wang, Robert D Ott, Gulfem D Guler, Brian Weiner, Walter J Chazin, Ellen Fanning

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 84 citations in OpenAlex.

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  16. Roles of OB-Fold Proteins in Replication Stress.Frontiers in cell and developmental biology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Xiaohua JiangDepartment of Biological Sciences, Vanderbilt University, Nashville, TN 37232-8725, USA.
Vitaly Klimovich
Alphonse I Arunkumar
Erik B Hysinger
Yingda Wang
Robert D Ott
Gulfem D Guler
Brian Weiner
Walter J Chazin
Ellen Fanning
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
Structural Biology Facility CoreP30ES000267 · NIEHS · VANDERBILT UNIVERSITY · PI GUENGERICH, F PETER · 1985 to 2014
$20.3M
CONTROL OF SIMIAN VIRUS 40 AND CELLULAR DNA REPLICATIONR01GM052948 · NIGMS · VANDERBILT UNIVERSITY · PI FRIEDMAN, KATHERINE LOUISE · 1995 to 2013
$6.1M
Structural Basis for RPA Functions in DNA ProcessingR01GM065484 · NIGMS · VANDERBILT UNIVERSITY · PI CHAZIN, WALTER J. · 2003 to 2015
$3.9M
NCI NIH HHS P30 CA068485NCI NIH HHS P30 CA68485NIEHS NIH HHS P30 ES000267NIEHS NIH HHS P50 ES00267NIGMS NIH HHS GM52948NIGMS NIH HHS GM65484NIGMS NIH HHS R01 GM052948NIGMS NIH HHS R01 GM065484
6 · The paper itself

Abstract

We report that during activation of the simian virus 40 (SV40) pre-replication complex, SV40 T antigen (Tag) helicase actively loads replication protein A (RPA) on emerging single-stranded DNA (ssDNA). This novel loading process requires physical interaction of Tag origin DNA-binding domain (OBD) with the RPA high-affinity ssDNA-binding domains (RPA70AB). Heteronuclear NMR chemical shift mapping revealed that Tag-OBD binds to RPA70AB at a site distal from the ssDNA-binding sites and that RPA70AB, Tag-OBD, and an 8-nucleotide ssDNA form a stable ternary complex. Intact RPA and Tag also interact stably in the presence of an 8-mer, but Tag dissociates from the complex when RPA binds to longer oligonucleotides. Together, our results imply that an allosteric change in RPA quaternary structure completes the loading reaction. A mechanistic model is proposed in which the ternary complex is a key intermediate that directly couples origin DNA unwinding to RPA loading on emerging ssDNA.

Indexed as

DNA ReplicationAntigens, Polyomavirus TransformingBinding SitesDNA, Single-StrandedHumansMagnetic Resonance SpectroscopyProtein Interaction MappingProtein Structure, QuaternaryProtein Structure, TertiaryReplication OriginReplication Protein AStatic ElectricityAntigens, Polyomavirus TransformingDNA, Single-StrandedReplication Protein ARPA1 protein, human

Identifiers

PMID17110927
PMCPMC1679769
OpenAlexW2043661336

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.