Evidence map›Paper›PMID 17110925›Full record

ArticleThe EMBO journal2006

Increased frequency of homologous recombination and T-DNA integration in Arabidopsis CAF-1 mutants.

Masaki Endo, Yuichi Ishikawa, Keishi Osakabe, Shigeki Nakayama, Hidetaka Kaya, Takashi Araki, Kei-ichi Shibahara, Kiyomi Abe, Hiroaki Ichikawa, Lisa Valentine and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 165 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Genomic consequences associated with Agrobacterium-mediated transformation of plants.The Plant journal : for cell and molecular biology · 2024
    Review
  7. Frontiers in plant science · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Targeted DNA insertion in plants.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Review
  17. Biodesign research · 2020
    Review
  18. Frontiers in plant science · 2020
    Article
  19. Review
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Masaki EndoDivision of Plant Sciences, National Institute of Agrobiological Sciences, Kannondai, Tsukuba, Ibaraki, Japan.
Yuichi Ishikawa
Keishi Osakabe
Shigeki Nakayama
Hidetaka Kaya
Takashi Araki
Kei-ichi Shibahara
Kiyomi Abe
Hiroaki Ichikawa
Lisa Valentine
Barbara Hohn
Seiichi Toki
Institute of Agrobiological Sciences · JPKyoto University · JPFriedrich Miescher Institute · CHTohoku University · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chromatin assembly factor 1 (CAF-1) is involved in nucleo some assembly following DNA replication and nucleotide excision repair. In Arabidopsis thaliana, the three CAF-1 subunits are encoded by FAS1, FAS2 and, most likely, MSI1, respectively. In this study, we asked whether genomic stability is altered in fas1 and fas2 mutants that are lacking CAF-1 activity. Depletion of either subunit increased the frequency of somatic homologous recombination (HR) in planta approximately 40-fold. The frequency of transferred DNA (T-DNA) integration was also elevated. A delay in loading histones onto newly replicated or repaired DNA might make these DNA stretches more accessible, both to repair enzymes and to foreign DNA. Furthermore, fas mutants exhibited increased levels of DNA double-strand breaks, a G2-phase retardation that accelerates endoreduplication, and elevated levels of mRNAs coding for proteins involved in HR-all factors that could also contribute to upregulation of HR frequency in fas mutants.

Indexed as

ArabidopsisArabidopsis ProteinsCell CycleChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneCyclin BDNA, BacterialDNA-Binding ProteinsDNA Breaks, Double-StrandedDNA DamageGene DeletionGenes, PlantGenes, ReporterGenomic InstabilityGlucuronidaseImmunohistochemistryArabidopsis ProteinsChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneCycB1 protein, ArabidopsisCyclin BDNA, BacterialDNA-Binding ProteinsGlucuronidaseT-DNA

Identifiers

PMID17110925
PMCPMC1679757
OpenAlexW2171441334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.