Evidence map›Paper›PMID 17109470›Full record

ArticleEuropean journal of immunology2006

NF-kappa B binds to the immunoglobulin S gamma 3 region in vivo during class switch recombination.

Lili Wang, Robert Wuerffel, Amy L Kenter

Open access · bronzeAbstract read
In one paragraph

Article in European journal of immunology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. 53BP1 Contributes toJournal of immunology (Baltimore, Md. : 1950) · 2017
    Article
  5. Article
  6. Impaired B cell development and function in the absence of IkappaBNS.Journal of immunology (Baltimore, Md. : 1950) · 2011
    Article
  7. Article
  8. Article
  9. Roles of the NF-kappaB pathway in lymphocyte development and function.Cold Spring Harbor perspectives in biology · 2010
    Review
  10. Article
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Lili WangDepartment of Microbiology and Immunology, University of Illinois College of Medicine, Chicago, IL 60612-7344, USA.
Robert Wuerffel
Amy L Kenter
University of Illinois Chicago · USIllinois College · US

Funding

Factors and DNA Motifs Involved in Ig Class SwitchR01AI052400 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI KENTER, AMY L · 2003 to 2012
$3.7M
NIAID NIH HHS AI/GM52400NIAID NIH HHS R01 AI052400
6 · The paper itself

Abstract

Ig class switch recombination (CSR) is dependent upon the expression of activation-induced deaminase and targeted to specific isotypes by germ-line transcript expression and isotype-specific factors. NF-kappaB plays critical roles in multiple aspects of B cell biology and has been implicated in the mechanism of CSR by in vitro binding assays and altered S/S junctions derived from NF-kappaB p50-deficient mice. However, the pleiotropic contributions of NF-kappaB to gene expression in B cells has made discerning a direct role for NF-kappaB in CSR difficult. We now observe that binding of NF-kappaB components p50 and p65 is detected on Sgamma3 in vivo following lipopolysaccharide (LPS) activation and repressed by LPS + IL-4, suggesting a direct role for this factor in CSR. In vivo footprinting confirms occupancy of a previously defined NF-kappaB recognition site in Sgamma3 with the same temporal kinetics as found in the chromatin immunoprecipitation analysis. Binding of NF-kappaB components p50 and p65 was also detected on Sgamma1 following B cell activation. H3 histone hyper acetylation at Sgamma1 is strongly correlated with NF-kappaB binding, suggesting that NF-kappaB mediates chromatin remodeling in the Sgamma3 and Sgamma1 region.

Indexed as

Gene Rearrangement, B-LymphocyteRecombination, GeneticAnimalsBinding Sites, AntibodyCells, CulturedChromatin Assembly and DisassemblyImmunoglobulin Class SwitchingImmunoglobulin gamma-ChainsImmunoglobulin Switch RegionMiceMice, Inbred C57BLNF-kappa BProtein BindingImmunoglobulin gamma-ChainsNF-kappa B

Identifiers

PMID17109470
PMCPMC4979565
OpenAlexW2060565383

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.