ArticleNucleic acids research2007
eSLDB: eukaryotic subcellular localization database.
Article in Nucleic acids research, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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Who cites it
31 citing papers in PubMed.
- dbMisLoc: A Manually Curated Database of Conditional Protein Mis-localization Events.Interdisciplinary sciences, computational life sciences · 2023Article
- A review from biological mapping to computation-based subcellular localization.Molecular therapy. Nucleic acids · 2023Review
- FungiProteomeDB: a database for the molecular weight and isoelectric points of the fungal proteomes.Database : the journal of biological databases and curation · 2023Article
- PlantMWpIDB: a database for the molecular weight and isoelectric points of the plant proteomes.Scientific reports · 2022Article
- Barcoded reciprocal hemizygosity analysis via sequencing illuminates the complex genetic basis of yeast thermotolerance.G3 (Bethesda, Md.) · 2022Article
- Datanator: an integrated database of molecular data for quantitatively modeling cellular behavior.Nucleic acids research · 2021Article
- Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions.Frontiers in microbiology · 2021Review
- New insights on human essential genes based on integrated analysis and the construction of the HEGIAP web-based platform.Briefings in bioinformatics · 2020Article
- Genome-Scale Characterization of Predicted Plastid-Targeted Proteomes in Higher Plants.Scientific reports · 2020Article
- Review
- CyMIRA: The Cytonuclear Molecular Interactions Reference for Arabidopsis.Genome biology and evolution · 2019Article
- The C-terminal domain of p53 orchestrates the interplay between non-covalent and covalent poly(ADP-ribosyl)ation of p53 by PARP1.Nucleic acids research · 2018Article
- RNALocate: a resource for RNA subcellular localizations.Nucleic acids research · 2017Article
- LocSigDB: a database of protein localization signals.Database : the journal of biological databases and curation · 2015Article
- ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis.Nucleic acids research · 2015Article
- COMPARTMENTS: unification and visualization of protein subcellular localization evidence.Database : the journal of biological databases and curation · 2014Article
- Bagging with CTD--a novel signature for the hierarchical prediction of secreted protein trafficking in eukaryotes.Genomics, proteomics & bioinformatics · 2013Article
- HMPAS: Human Membrane Protein Analysis System.Proteome science · 2013Article
- Prediction of essential proteins based on gene expression programming.BMC genomics · 2013Article
- Proteomic analysis of chloroplast-to-chromoplast transition in tomato reveals metabolic shifts coupled with disrupted thylakoid biogenesis machinery and elevated energy-production components.Plant physiology · 2012Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Eukaryotic Subcellular Localization DataBase collects the annotations of subcellular localization of eukaryotic proteomes. So far five proteomes have been processed and stored: Homo sapiens, Mus musculus, Caenorhabditis elegans, Saccharomyces cerevisiae and Arabidopsis thaliana. For each sequence, the database lists localization obtained adopting three different approaches: (i) experimentally determined (when available); (ii) homology-based (when possible); and (iii) predicted. The latter is computed with a suite of machine learning based methods, developed in house. All the data are available at our website and can be searched by sequence, by protein code and/or by protein description. Furthermore, a more complex search can be performed combining different search fields and keys. All the data contained in the database can be freely downloaded in flat file format. The database is available at http://gpcr.biocomp.unibo.it/esldb/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.