Evidence map›Paper›PMID 17101794›Full record

ArticleMolecular and cellular biology2007

Role for the Ssu72 C-terminal domain phosphatase in RNA polymerase II transcription elongation.

Mariela Reyes-Reyes, Michael Hampsey

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 53 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
  5. Ssu72 Dual-Specific Protein Phosphatase: From Gene to Diseases.International journal of molecular sciences · 2021
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mariela Reyes-ReyesDepartment of Biochemistry, Robert Wood Johnson Medical School, 683 Hoes Lane West, Piscataway, NJ 08854, USA.
Michael Hampsey
Johnson University · US

Funding

UMDNJ-RUTGERS UNIVERSITY PIPELINE PROGRAMR25GM055145 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAIMOVICH, BEATRICE, LANGER, JEROME ALAN · 1996 to 2020
$8.7M
The coupling of mRNA transcription and 3' end formationR01GM068887 · NIGMS · TUFTS UNIVERSITY BOSTON · PI MOORE, CLAIRE L · 2003 to 2010
$4.5M
Inter-University Doctoral Degree:Puerto Rico to RutgersR25GM058389 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI LANGER, JEROME ALAN, RIOS-VELAZQUEZ, CARLOS · 1998 to 2016
$3.0M
GENETIC ANALYSIS OF TRANSCRIPTION INITIATION IN YEASTR01GM039484 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI HAMPSEY, MICHAEL · 1995 to 2012
$2.7M
GRADUATE TRAINING IN CELLULAR AND MOLECULAR BIOLOGYT32GM008360 · NIGMS · UNIV OF MED/DENT NJ-R W JOHNSON MED SCH · PI MADURA, KIRAN · 1991 to 2011
$1.1M
NIGMS NIH HHS GM 008360NIGMS NIH HHS GM 55145NIGMS NIH HHS GM 58389NIGMS NIH HHS R01 GM039484NIGMS NIH HHS R01 GM068887NIGMS NIH HHS R01 GM 39484NIGMS NIH HHS R01 GM 68887NIGMS NIH HHS R25 GM055145NIGMS NIH HHS R25 GM058389NIGMS NIH HHS T32 GM008360
6 · The paper itself

Abstract

The RNA polymerase II (RNAP II) transcription cycle is accompanied by changes in the phosphorylation status of the C-terminal domain (CTD), a reiterated heptapeptide sequence (Y(1)S(2)P(3)T(4)S(5)P(6)S(7)) present at the C terminus of the largest RNAP II subunit. One of the enzymes involved in this process is Ssu72, a CTD phosphatase with specificity for serine-5-P. Here we report that the ssu72-2-encoded Ssu72-R129A protein is catalytically impaired in vitro and that the ssu72-2 mutant accumulates the serine-5-P form of RNAP II in vivo. An in vitro transcription system derived from the ssu72-2 mutant exhibits impaired elongation efficiency. Mutations in RPB1 and RPB2, the genes encoding the two largest subunits of RNAP II, were identified as suppressors of ssu72-2. The rpb1-1001 suppressor encodes an R1281A replacement, whereas rpb2-1001 encodes an R983G replacement. This information led us to identify the previously defined rpb2-4 and rpb2-10 alleles, which encode catalytically slow forms of RNAP II, as additional suppressors of ssu72-2. Furthermore, deletion of SPT4, which encodes a subunit of the Spt4-Spt5 early elongation complex, also suppresses ssu72-2, whereas the spt5-242 allele is suppressed by rpb2-1001. These results define Ssu72 as a transcription elongation factor. We propose a model in which Ssu72 catalyzes serine-5-P dephosphorylation subsequent to addition of the 7-methylguanosine cap on pre-mRNA in a manner that facilitates the RNAP II transition into the elongation stage of the transcription cycle.

Indexed as

Transcription, GeneticAlanineAllelesAmino Acid SequenceArginineCarrier ProteinsChromosomal Proteins, Non-HistoneDNA, FungalModels, GeneticMolecular Sequence DatamRNA Cleavage and Polyadenylation FactorsNuclear ProteinsPhenotypePhosphoprotein PhosphatasesProtein BindingProtein Structure, SecondaryAlanineArgininecarboxy-terminal domain phosphataseCarrier ProteinsChromosomal Proteins, Non-HistoneDNA, FungalmRNA Cleavage and Polyadenylation FactorsNuclear ProteinsPhosphoprotein PhosphatasesRNA Polymerase IIRPB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSPT4 protein, S cerevisiaeSPT5 transcriptional elongation factorSSU72 protein, S cerevisiaeTAF2 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTranscriptional Elongation FactorsTranscription Factor TFIID

Identifiers

PMID17101794
PMCPMC1800697
OpenAlexW2142647781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.