Evidence map›Paper›PMID 17098251›Full record

ArticleJournal of molecular biology2007

Interactions between HIV-1 Gag molecules in solution: an inositol phosphate-mediated switch.

Siddhartha A K Datta, Zhuojun Zhao, Patrick K Clark, Sergey Tarasov, Jerry N Alexandratos, Stephen J Campbell, Mamuka Kvaratskhelia, Jacob Lebowitz, Alan Rein

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 137 citations in OpenAlex.

  1. Pleomorphism in Wild-Type and Engineered PP7 Virus-Like Particles.Small (Weinheim an der Bergstrasse, Germany) · 2025
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  19. Journal of virology · 2020
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Siddhartha A K DattaHIV Drug Resistance Program, National Cancer Institute-Frederick, Frederick, MD 21702, USA.
Zhuojun Zhao
Patrick K Clark
Sergey Tarasov
Jerry N Alexandratos
Stephen J Campbell
Mamuka Kvaratskhelia
Jacob Lebowitz
Alan Rein
Frederick National Laboratory for Cancer Research · USNational Cancer Institute · USThe Ohio State University · USOffice of Research Services · USScience Applications International Corporation (United States) · US

Funding

SEA Influenza Clinical Research NetworkN01CO12400 · NCI · LEIDOS BIOMEDICAL RESEARCH, INC. · 2007 to 2008
$225.2M
Retrovirus Assembly and MaturationZ01BC010511 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI REIN, ALAN · 2003 to 2008
$2.1M
Characterizing HIV Gag and Malaria Surface ProteinsZ01EB000023 · NIBIB · BIOMEDICAL IMAGING & BIOENGINEERING · PI LEBOWITZ, JACOB · 2007 to 2007
$28k
Intramural NIH HHSNCI NIH HHS N01 CO012400NCI NIH HHS N01 CO 12400NCI NIH HHS Z01 BC010511-03
6 · The paper itself

Abstract

Retrovirus particle assembly is mediated by the Gag protein. Gag is a multi-domain protein containing discrete domains connected by flexible linkers. When recombinant HIV-1 Gag protein (lacking myristate at its N terminus and the p6 domain at its C terminus) is mixed with nucleic acid, it assembles into virus-like particles (VLPs) in a fully defined system in vitro. However, this assembly is defective in that the radius of curvature of the VLPs is far smaller than that of authentic immature virions. This defect can be corrected to varying degrees by addition of inositol phosphates to the assembly reaction. We have now explored the binding of inositol hexakisphosphate (IP6) to Gag and its effects upon the interactions between Gag protein molecules in solution. Our data indicate that basic regions at both ends of the protein contribute to IP6 binding. Gag is in monomer-dimer equilibrium in solution, and mutation of the previously described dimer interface within its capsid domain drastically reduces Gag dimerization. In contrast, when IP6 is added, Gag is in monomer-trimer rather than monomer-dimer equilibrium. The Gag protein with a mutation at the dimer interface also remains almost exclusively monomeric in IP6; thus the "dimer interface" is essential for the trimeric interaction in IP6. We discuss possible explanations for these results, including a change in conformation within the capsid domain induced by the binding of IP6 to other domains within the protein. The participation of both ends of Gag in IP6 interaction suggests that Gag is folded over in solution, with its ends near each other in three-dimensional space; direct support for this conclusion is provided in a companion manuscript. As Gag is an extended rod in immature virions, this apparent proximity of the ends in solution implies that it undergoes a major conformational change during particle assembly.

Indexed as

5-HydroxytryptophanBinding SitesChromatography, GelDimerizationGene Products, gagHIV-1Mass SpectrometryMutant ProteinsMutationPhytic AcidProtein BindingProtein FootprintingProtein Structure, QuaternaryProtein Structure, TertiarySolutionsTritium5-HydroxytryptophanGene Products, gagMutant ProteinsPhytic AcidSolutionsTritium

Identifiers

PMID17098251
PMCPMC1829305
OpenAlexW2045028231

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.