Evidence map›Paper›PMID 17095106›Full record

ArticleBiochimica et biophysica acta

Identification of hnRNPs K, L and A2/B1 as candidate proteins involved in the nutritional regulation of mRNA splicing.

Brian N Griffith, Callee M Walsh, Wioletta Szeszel-Fedorowicz, Aaron T Timperman, Lisa M Salati

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 29 citations in OpenAlex.

  1. Oncogenic SRSF3 in health and diseases.International journal of biological sciences · 2023
    Review
  2. Review
  3. Article
  4. Palmitate- and C6 ceramide-inducedNutrition & metabolism · 2018
    Article
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  6. Review
  7. Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Brian N GriffithDepartment of Biochemistry and Molecular Pharmacology WVU Health Sciences Center, PO Box 9142 Morgantown, WV 26506, USA.
Callee M Walsh
Wioletta Szeszel-Fedorowicz
Aaron T Timperman
Lisa M Salati
West Virginia University Hospitals · USWest Virginia University · US

Funding

THE ROLE OF HEF1 PROTEIN IN INVASION OF METASTATIC BREAST CANCERP20RR016440 · NCRR · WEST VIRGINIA UNIVERSITY · PI CUFF, CHRISTOPHER F · 2001 to 2010
$22.8M
REGULATION OF GENE EXPRESSION BY DIETARY FATR01DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 1999 to 2012
$2.8M
Regulation of Gene Expression by Dietary FatR56DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 2008 to 2008
$273k
REGULATION OF GENE EXPRESSION BY DIETARY FATR29DK046897 · NIDDK · WEST VIRGINIA UNIVERSITY · PI SALATI, LISA M · 1993 to 1997
–
NCRR NIH HHS 5P20RR016440-05NCRR NIH HHS P20 RR016440NIDDK NIH HHS DK46897NIDDK NIH HHS R01 DK046897NIDDK NIH HHS R56 DK046897
6 · The paper itself

Abstract

Nutrient regulation of glucose-6-phosphate dehydrogenase (G6PD) expression occurs through changes in the rate of splicing of G6PD pre-mRNA. This posttranscriptional mechanism accounts for the 12- to 15-fold increase in G6PD expression in livers of mice that were starved and then refed a high-carbohydrate diet. Regulation of G6PD pre-mRNA splicing requires a cis-acting element in exon 12 of the pre-mRNA. Using RNA probes to exon 12 and nuclear extracts from livers of mice that were starved or refed, proteins of 60 kDa and 37 kDa were detected bound to nucleotides 65-79 of exon 12 and this binding was decreased by 50% with nuclear extracts from refed mice. The proteins were identified as hnRNPs K, L, and A2/B1 by LC-MS/MS. The decrease in binding of these proteins to exon 12 during refeeding was not accompanied by a decrease in the total amount of these proteins in total nuclear extract. HnRNPs K, L and A2/B1 have known roles in the regulation of mRNA splicing. The decrease in binding of these proteins during treatments that increase G6PD expression is consistent with a role for these proteins in the inhibition of G6PD mRNA splicing.

Indexed as

RNA SplicingAnimalsBlotting, WesternChromatography, LiquidDietary CarbohydratesElectrophoresis, Gel, Two-DimensionalExonsGlucosephosphate DehydrogenaseHeterogeneous-Nuclear Ribonucleoprotein Group A-BHeterogeneous-Nuclear Ribonucleoprotein KHeterogeneous-Nuclear Ribonucleoprotein LMaleMass SpectrometryMiceMice, Inbred C57BLMolecular WeightDietary CarbohydratesGlucosephosphate DehydrogenaseHeterogeneous-Nuclear Ribonucleoprotein Group A-BHeterogeneous-Nuclear Ribonucleoprotein KHeterogeneous-Nuclear Ribonucleoprotein LhnRNP A2OligoribonucleotidesRNA-Binding ProteinsRNA Precursors

Identifiers

PMID17095106
PMCPMC1828878
OpenAlexW2018517017

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.