Evidence map›Paper›PMID 17089422›Full record

ArticleAmerican journal of medical genetics. Part A2006

PVRL1 variants contribute to non-syndromic cleft lip and palate in multiple populations.

Joseph R Avila, Peter A Jezewski, Alexandre R Vieira, Iêda M Orioli, Eduardo E Castilla, Kaare Christensen, Sandra Daack-Hirsch, Paul A Romitti, Jeffrey C Murray

Abstract read
In one paragraph

Article in American journal of medical genetics. Part A, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Rare missense variants inFrontiers in genetics · 2026
    Article
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  6. Review
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  18. Genetics of nonsyndromic orofacial clefts.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2012
    Review
  19. Genetic studies in the Nigerian population implicate an MSX1 mutation in complex oral facial clefting disorders.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Joseph R AvilaDepartment of Cytokine Biology, The Forsyth Institute and Department of Developmental Biology, Harvard School of Dental Medicine, Boston, Massachusetts, USA.
Peter A Jezewski
Alexandre R Vieira
Iêda M Orioli
Eduardo E Castilla
Kaare Christensen
Sandra Daack-Hirsch
Paul A Romitti
Jeffrey C Murray

Funding

PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI FITZPATRICK, DAVID · 2004 to 2008
$10.1M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
GENE-ENVIRONMENT INTERACTION IN FACIAL CLEFTSR01DE011948 · NIDCR · UNIVERSITY OF SOUTHERN DENMARK · PI CHRISTENSEN, KAARE · 1998 to 2006
$1.8M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
International Maternal &Child Health Research/TrainingD43TW005503 · FIC · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2001 to 2005
$915k
FIC NIH HHS D43 TW005503FIC NIH HHS TW 05503NIDCR NIH HHS DE08559NIDCR NIH HHS DE9160NIDCR NIH HHS P50 DE016215NIDCR NIH HHS P50 DE16215NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE011948NIDCR NIH HHS R01 DE11948NIDCR NIH HHS R37 DE008559
6 · The paper itself

Abstract

Poliovirus Receptor Like-1 (PVRL1) is a member of the immunoglobulin super family that acts in the initiation and maintenance of epithelial adherens junctions and is mutated in the cleft lip and palate/ectodermal dysplasia 1 syndrome (CLPED1, OMIM #225000). In addition, a common non-sense mutation in PVRL1 was discovered more often among non-syndromic sporadic clefting cases in Northern Venezuela in a previous case-control study. The present work sought to ascertain the role of PVRL1 in the sporadic forms of orofacial clefting in multiple populations. Multiple rare and common variants from all three splice isoforms were initially ascertained by sequencing 92 Iowan and 86 Filipino cases and CEPH controls. Using a family-based analysis to examine these variants, the common glycine allele of the G361V coding variant was significantly overtransmitted among all orofacial clefting phenotypes (P = 0.005). This represented G361V genotyping from over 800 Iowan, Danish, and Filipino families. Among four rare amino acid changes found within the V1 and C1 domains, S112T and T131A were found adjacent to critical amino acid positions within the V1 variable domain, regions previously shown to mediate cell-to-cell and cell-to-virus adhesion. The T131A variant was not found in over 1,300 non-affected control samples although the alanine is found in other species. The serine of the S112T variant position is conserved across all known PVRL1 sequences. Together these data suggest that both rare and common mutations within PVRL1 make a minor contribution to disrupting the initiation and regulation of cell-to-cell adhesion and downstream morphogenesis of the embryonic face.

Indexed as

Genetic VariationAllelesAmino Acid SequenceCell Adhesion MoleculesCleft LipCleft PalateDNA Mutational AnalysisHumansLinkage DisequilibriumMolecular Sequence DataMutationNectinsPopulationCell Adhesion MoleculesNECTIN1 protein, humanNectins

Identifiers

PMID17089422
PMCPMC1885468

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.