Evidence map›Paper›PMID 17085556›Full record

ArticleJournal of bacteriology2007

Substrate specificity of the Escherichia coli outer membrane protease OmpP.

Bum-Yeol Hwang, Navin Varadarajan, Haixin Li, Sarah Rodriguez, Brent L Iverson, George Georgiou

Abstract read
In one paragraph

Article in Journal of bacteriology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Protamine cleavage specificity of the avian pathogenFrontiers in veterinary science · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Evaluation of immune response to recombinantIranian journal of veterinary research · 2019
    Article
  13. Transcriptional Landscape of aFrontiers in microbiology · 2018
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Fibrinolytic and coagulative activities of Yersinia pestis.Frontiers in cellular and infection microbiology · 2013
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Bum-Yeol HwangInstitute for Cellular and Molecular Biology, University of Texas, Austin, TX 78712, USA.
Navin Varadarajan
Haixin Li
Sarah Rodriguez
Brent L Iverson
George Georgiou

Funding

Interconversion of Specificity within Enzyme FamiliesR01GM073089 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI GEORGIOU, GEORGE GEORGIOU · 2005 to 2008
$1.7M
NIGMS NIH HHS GM073089NIGMS NIH HHS R01 GM073089
6 · The paper itself

Abstract

Escherichia coli OmpP is an F episome-encoded outer membrane protease that exhibits 71% amino acid sequence identity with OmpT. These two enzymes cleave substrate polypeptides primarily between pairs of basic amino acids. We found that, like OmpT, purified OmpP is active only in the presence of lipopolysaccharide. With optimal peptide substrates, OmpP exhibits high catalytic efficiency (k(cat)/K(m) = 3.0 x 10(6) M(-1)s(-1)). Analysis of the extended amino acid specificity of OmpP by substrate phage revealed that both Arg and Lys are strongly preferred at the P1 and P1' sites of the enzyme. In addition, Thr, Arg, or Ala is preferred at P2; Leu, Ala, or Glu is preferred at P4; and Arg is preferred at P3'. Notable differences in OmpP and OmpT specificities include the greater ability of OmpP to accept Lys at the P1 or P1', site as well as the prominence of Ser at P3 in OmpP substrates. Likewise, the OmpP P1 site could better accommodate Ser; as a result, OmpP was able to cleave a peptide substrate between Ser-Arg about 120 times more efficiently than was OmpT. Interestingly, OmpP and OmpT cleave peptides with three consecutive Arg residues at different sites, a difference in specificity that might be important in the inactivation of cationic antimicrobial peptides. Accordingly, we show that the presence of an F' episome results in increased resistance to the antimicrobial peptide protamine both in ompT mutants and in wild-type E. coli cells.

Indexed as

Amino Acid SequenceAntimicrobial Cationic PeptidesBacterial Outer Membrane ProteinsBlotting, WesternChromatography, LiquidEscherichia coliEscherichia coli ProteinsHydrolasesKineticsMembrane ProteinsMolecular Sequence DataMutagenesis, Site-DirectedPeptide HydrolasesPeptide LibraryPeptidesProtaminesAntimicrobial Cationic PeptidesBacterial Outer Membrane ProteinsEscherichia coli ProteinsHydrolasesMembrane ProteinsompT protein, E coliOmpX protein, E coliPeptide HydrolasesPeptide LibraryPeptidesProtamines

Identifiers

PMID17085556
PMCPMC1797397

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.