ArticlePlant molecular biology2007
Distinct reorganization of the genome transcription associates with organogenesis of somatic embryo, shoots, and roots in rice.
Article in Plant molecular biology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 29 citations in OpenAlex.
- Transcriptome and Gene Expression Analysis RevealedInternational journal of molecular sciences · 2024Article
- An Introduction to Plant Cell, Tissue, and Organ Culture: Current Status and Perspectives.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Review
- A role of age-dependent DNA methylation reprogramming in regulating the regeneration capacity of Boea hygrometrica leaves.Functional & integrative genomics · 2020Article
- PtWOX11 acts as master regulator conducting the expression of key transcription factors to induce de novo shoot organogenesis in poplar.Plant molecular biology · 2018Article
- Roles for Light, Energy, and Oxygen in the Fate of Quiescent Axillary Buds.Plant physiology · 2018Review
- Analysis of Genes with Alternatively Spliced Transcripts in the Leaf, Root, Panicle and Seed of Rice Using a Long Oligomer Microarray and RNA-Seq.Molecules and cells · 2017Article
- Article
- Morpho-histology and genotype dependence of in vitro morphogenesis in mature embryo cultures of wheat.Protoplasma · 2014Article
- Methylome reorganization during in vitro dedifferentiation and regeneration of Populus trichocarpa.BMC plant biology · 2013Article
- Extensive modulation of the transcription factor transcriptome during somatic embryogenesis in Arabidopsis thaliana.PloS one · 2013Article
- Digital gene expression profiling by 5'-end sequencing of cDNAs during reprogramming in the moss Physcomitrella patens.PloS one · 2012Article
- Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminata.BMC plant biology · 2011Article
- Large impact of the apoplast on somatic embryogenesis in Cyclamen persicum offers possibilities for improved developmental control in vitro.BMC plant biology · 2010Article
- Genome scale transcriptome analysis of shoot organogenesis in Populus.BMC plant biology · 2009Article
- Transcriptome analysis during somatic embryogenesis of the tropical monocot Elaeis guineensis: evidence for conserved gene functions in early development.Plant molecular biology · 2009Article
- High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression.The Plant cell · 2008Article
- A genome-wide transcriptional activity survey of rice transposable element-related genes.Genome biology · 2007Article
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Authors and funding
9 authors at 3 institutions in 2 countries.
Funding
Abstract
Most plant cells retain the capacity to differentiate into all the other cell and organ types that constitute a plant. However, genome-wide transcriptional activities underlying the process of cell differentiation are poorly understood, especially in monocot plants. Here we used a rice (Oryza sativa) cell culture system to generate somatic embryos, which were further induced into shoots and roots. The global transcriptional reorganization during the development of somatic embryos, shoots, and roots from cultured cells was studied using a rice whole genome microarray and verified by RNA blotting analysis of representative genes. Overall, only 1-3% of expressed genes were differentially regulated during each organogenesis process at the examined time point. Also metabolic pathways were minimally regulated. Thus the genes that dictating organ formation should be relatively small in number. Comparison of these three transcriptomes revealed little overlap during these three organogenesis processes. These results indicate that each organogenesis involves specific reorganization of genome expression.
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