Evidence map›Paper›PMID 17071746›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Identification of a starter unit acyl-carrier protein transacylase domain in an iterative type I polyketide synthase.

Jason M Crawford, Blair C R Dancy, Eric A Hill, Daniel W Udwary, Craig A Townsend

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 177 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Biosynthesis of Cytosporones in Leotiomycetous Filamentous Fungi.Journal of the American Chemical Society · 2024
    Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Subcellular localization of fungal specialized metabolites.Fungal biology and biotechnology · 2022
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. The role of the iterative modules in polyketide synthase evolution.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Jason M CrawfordDepartment of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218, USA.
Blair C R Dancy
Eric A Hill
Daniel W Udwary
Craig A Townsend
Johns Hopkins University · USUniversity of Cambridge · GBUniversity of Montana · US

Funding

Iterative Polyketide Synthase Function, Structure and PathwaysR01ES001670 · NIEHS · JOHNS HOPKINS UNIVERSITY · PI TOWNSEND, CRAIG ARTHUR · 1985 to 2023
$9.2M
Biosynthesis of Beta-Lactam AntibioticsR37AI014937 · NIAID · JOHNS HOPKINS UNIVERSITY · PI TOWNSEND, CRAIG ARTHUR · 2004 to 2013
$5.2M
NIAID NIH HHS R37 AI014937NIEHS NIH HHS ES 001670NIEHS NIH HHS R01 ES001670
6 · The paper itself

Abstract

Polyketides are a class of natural products that exhibit a wide range of functional and structural diversity. They include antibiotics, immunosuppressants, antifungals, antihypercholesterolemics, and cytotoxins. Polyketide synthases (PKSs) use chemistry similar to fatty acid synthases (FASs), although building block variation and differing extents of reduction of the growing polyketide chain underlie their biosynthetic versatility. In contrast to the well studied sequential modular type I PKSs, less is known about how the iterative type I PKSs carry out and control chain initiation, elongation, folding, and cyclization during polyketide processing. Domain structure analysis of a group of related fungal, nonreducing PKSs has revealed well defined N-terminal domains longer than commonly seen for FASs and modular PKSs. Predicted structure of this domain disclosed a region similar to malonyl-CoA:acyl-carrier protein (ACP) transacylases (MATs). MATs play a key role transferring precursor CoA thioesters from solution onto FASs and PKSs for chain elongation. On the basis of site-directed mutagenesis, radiolabeling, and kinetics experiments carried out with individual domains of the norsolorinic acid PKS, we propose that the N-terminal domain is a starter unit:ACP transacylase (SAT domain) that selects a C(6) fatty acid from a dedicated yeast-like FAS and transfers this unit onto the PKS ACP, leading to the production of the aflatoxin precursor, norsolorinic acid. These findings could indicate a much broader role for SAT domains in starter unit selection among nonreducing iterative, fungal PKSs, and they provide a biochemical rationale for the classical acetyl "starter unit effect."

Indexed as

Acyl-Carrier Protein S-AcetyltransferaseAflatoxinsAmino Acid SequenceAspergillusBase SequenceCloning, MolecularDNA, FungalGenes, FungalMolecular Sequence DataMolecular StructureMutagenesis, Site-DirectedPolyketide SynthasesProtein Structure, TertiaryRecombinant ProteinsSequence Homology, Amino AcidAcyl-Carrier Protein S-AcetyltransferaseAflatoxinsDNA, FungalPolyketide SynthasesRecombinant Proteins

Identifiers

PMID17071746
PMCPMC1636523
OpenAlexW2014703983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.