Evidence map›Paper›PMID 17071659›Full record

ArticleBiophysical journal2007

Cholesterol surrogates: a comparison of cholesterol and 16:0 ceramide in POPC bilayers.

Sagar A Pandit, See-Wing Chiu, Eric Jakobsson, Ananth Grama, H L Scott

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Biophysical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 72 citations in OpenAlex.

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  8. The toxicity of amyloid β oligomers.International journal of molecular sciences · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Sagar A PanditDepartment of Computer Science, Purdue University, West Lafayette, Indiana, USA.
See-Wing Chiu
Eric Jakobsson
Ananth Grama
H L Scott
Purdue University West Lafayette · USUniversity of Illinois Urbana-Champaign · USIllinois Institute of Technology · US

Funding

PHS HHS 2006-139-1
6 · The paper itself

Abstract

Experimental evidence indicates that, under some circumstances, "surrogate" molecules may play the same role as cholesterol in ordering membrane lipids. The simplest molecule in this class is Ceramide. In this article, we describe atomic-level molecular dynamics simulations designed to shed light on this phenomenon. We run simulations of hydrated phosphoryl-oleoyl phosphatidylcholine (POPC) bilayers containing cholesterol, and containing ceramide, in concentrations ranging from 5% to 33%. We also perform a simulation of a pure POPC bilayer to verify the simulation force fields against experimental structural data for POPC. Our simulation data are in good agreement with experimental data for the partial molecular volumes, areas, form factors, and order parameters. These simulations suggest that ceramide and cholesterol have a very similar effect on the POPC bilayer, although ceramide is less effective in inducing order in the bilayer compared with cholesterol at the same concentrations.

Indexed as

Membrane FluidityModels, ChemicalModels, MolecularCeramidesCholesterolComputer SimulationLipid BilayersPhosphatidylcholinesStress, Mechanical1-palmitoyl-2-oleoylphosphatidylcholineCeramidesCholesterolLipid BilayersPhosphatidylcholines

Identifiers

PMID17071659
PMCPMC1779968
OpenAlexW2029316757

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.