Evidence map›Paper›PMID 17065326›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Genome scan for cis-regulatory DNA motifs associated with social behavior in honey bees.

Saurabh Sinha, Xu Ling, Charles W Whitfield, Chengxiang Zhai, Gene E Robinson

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Behavior-related gene regulatory networks: A new level of organization in the brain.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Recombination is associated with the evolution of genome structure and worker behavior in honey bees.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  14. New meta-analysis tools reveal common transcriptional regulatory basis for multiple determinants of behavior.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  15. Article
  16. Mechanisms of stable lipid loss in a social insect.The Journal of experimental biology · 2011
    Article
  17. Article
  18. Article
  19. Article
  20. Honey bee aggression supports a link between gene regulation and behavioral evolution.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Saurabh SinhaDepartment of Computer Science, Institute of Genomic Biology, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, Urbana, IL 61801, USA. sinhas@cs.uiuc.edu
Xu Ling
Charles W Whitfield
Chengxiang Zhai
Gene E Robinson

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Honey bees (Apis mellifera) undergo an age-related, socially regulated transition from working in the hive to foraging, which is associated with changes in the expression of thousands of genes in the brain. To begin to study the cis-regulatory code underlying this massive social regulation of gene expression, we used the newly sequenced honey bee genome to scan the promoter regions of eight sets of behaviorally related genes differentially expressed in the brain in the context of division of labor among worker bees, for 41 cis-regulatory motifs previously characterized in Drosophila melanogaster. Binding sites for the transcription factors Hairy, GAGA, Adf1, Cf1, Snail, and Dri, known to function in nervous system development, olfactory learning, or hormone binding in Drosophila, were significantly associated with one or more gene sets. The presence of some binding sites also predicted expression patterns for as many as 71% of the genes in some gene sets. These results suggest that there is a robust relationship between cis and social regulation of brain gene expression, especially considering that we studied <15% of all known transcription factors. These results also suggest that transcriptional networks involved in the regulation of development in Drosophila are used to regulate behavioral development in adult honey bees. However, differences in gene regulation between these two processes are suggested by the finding that the promoter regions for the behaviorally related bee genes differed in both motif occurrence and G/C content relative to their Drosophila orthologs.

Indexed as

Behavior, AnimalSocial BehaviorAnimalsBase CompositionBeesBrainDNAGene Expression RegulationGenome, InsectInsect ProteinsOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticRegulatory Elements, TranscriptionalSnailsDNAInsect Proteins

Identifiers

PMID17065326
PMCPMC1637586

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.