Evidence map›Paper›PMID 17065315›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Generation of HIV-1 derivatives that productively infect macaque monkey lymphoid cells.

Kazuya Kamada, Tatsuhiko Igarashi, Malcolm A Martin, Boonruang Khamsri, Kazuki Hatcho, Tomoki Yamashita, Mikako Fujita, Tsuneo Uchiyama, Akio Adachi

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 114 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Frontiers in microbiology · 2021
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Kazuya KamadaDepartment of Virology, Institute of Health Biosciences, University of Tokushima Graduate School, Tokushima-shi, Tokushima 770-8503, Japan.
Tatsuhiko Igarashi
Malcolm A Martin
Boonruang Khamsri
Kazuki Hatcho
Tomoki Yamashita
Mikako Fujita
Tsuneo Uchiyama
Akio Adachi
Tokushima University · JPNational Institute of Allergy and Infectious Diseases · USNational Institutes of Health · US

Funding

Primate Lentivirus PathogenesisZIAAI000998 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI MARTIN, MALCOLM · 2009 to 2015
$11.3M
Primate Lentivirus PathogenesisZ01AI000998 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI MARTIN, MALCOLM · 2007 to 2008
$4.6M
Intramural NIH HHS
6 · The paper itself

Abstract

The narrow host range of human immunodeficiency virus type 1 (HIV-1) is caused in part by innate cellular factors such as apolipoprotein B mRNA-editing enzyme-catalytic polypeptide-like 3G (APOBEC3G) and TRIM5alpha, which restrict virus replication in monkey cells. Variant HIV-1 molecular clones containing both a 21-nucleotide simian immunodeficiency virus (SIV) Gag CA element, corresponding to the HIV-1 cyclophilin A-binding site, and the entire SIV vif gene were constructed. Long-term passage in a cynomolgus monkey lymphoid cell line resulted in the acquisition of two nonsynonymous changes in env, which conferred improved replication properties. A proviral molecular clone, derived from infected cells and designated NL-DT5R, was used to generate virus stocks capable of establishing spreading infections in the cynomolgus monkey T cell line and CD8-depleted peripheral blood mononuclear cells from five of five pig-tailed macaques and one of three rhesus monkeys. NL-DT5R, which genetically is >93% HIV-1, provides the opportunity, not possible with currently available SIV/HIV chimeric viruses, to analyze the function of multiple HIV-1 genes in a broad range of nonhuman primate species.

Indexed as

AnimalsAPOBEC-1 DeaminaseBase SequenceCapsid ProteinsCell LineCytidine DeaminaseDNA, ViralGenes, vifGenes, ViralHIV-1HumansLymphocytesMacacaMolecular Sequence DataSimian Immunodeficiency VirusVirus ReplicationAPOBEC-1 DeaminaseAPOBEC1 protein, humanCapsid ProteinsCytidine DeaminaseDNA, Viral

Identifiers

PMID17065315
PMCPMC1622925
OpenAlexW2050875248

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.