Evidence map›Paper›PMID 17065259›Full record

ArticleJournal of clinical microbiology2006

Use of internally controlled real-time genome amplification for detection of variola virus and other orthopoxviruses infecting humans.

C G Fedele, A Negredo, F Molero, M P Sánchez-Seco, A Tenorio

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

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  14. Development of real-time PCR assay for specific detection of cowpox virus.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

C G FedeleAlerts and Emergencies Unit, National Center of Microbiology, Instituto de Salud Carlos III, Ctra. Pozuelo Majadahonda Km 2, 28220 Majadahonda, Madrid, Spain. gfedele@isciii.es
A Negredo
F Molero
M P Sánchez-Seco
A Tenorio
Instituto de Salud Carlos III · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Smallpox, once a devastating disease caused by Variola virus, a member of the Orthopoxvirus genus, was eradicated in 1980. However, the importance of variola virus infections has been stressed widely in the last few years, particularly following recent social events in the world. Today, variola virus is considered to be one of the most significant agents with potential use as a biological weapon. In this study we developed an internally controlled real-time PCR assay for rapid detection and simultaneous differentiation of variola virus from other orthopoxviruses. The assay is based on TaqMan 3'-minor groove binder (MGB) chemistry and uses generic primers, designed in highly conserved genomic regions of the crmB gene, and three TaqMan MGB probes designed to identify orthopoxviruses, variola virus, and an internal control. The results obtained suggest that the assay is rapid, sensitive, specific, and suitable for the generic detection of orthopoxviruses and the identification of variola virus and avoids false-negative results in a single reaction tube.

Indexed as

Polymerase Chain ReactionAnimalsCell LineDNA PrimersDNA, ViralGenome, ViralHumansOrthopoxvirusQuality ControlReceptors, Tumor Necrosis FactorReference StandardsReproducibility of ResultsSensitivity and SpecificityVariola virusViral ProteinscrmB protein, OrthopoxvirusDNA PrimersDNA, ViralReceptors, Tumor Necrosis FactorViral Proteins

Identifiers

PMID17065259
PMCPMC1698395
OpenAlexW2131083350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.