Evidence map›Paper›PMID 17064406›Full record

ArticleBMC cancer2006

Frequent promoter hypermethylation of RASSF1A and CASP8 in neuroblastoma.

Paula Lázcoz, Jorge Muñoz, Manuel Nistal, Angel Pestaña, Ignacio Encío, Javier S Castresana

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed, 1 pooled it
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 1 synthesis or guideline pooled it, 56 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Expression ofInternational journal of molecular sciences · 2024
    Article
  5. Epigenetic Dysregulation inInternational journal of molecular sciences · 2023
    Review
  6. Article
  7. MYCN in Neuroblastoma: "Old Wine into New Wineskins".Diseases (Basel, Switzerland) · 2021
    Review
  8. Article
  9. Article
  10. Aberrant RASSF5 gene transcribed region hypermethylation in pediatric hepatoblastomas.International journal of clinical and experimental pathology · 2018
    Article
  11. Article
  12. Neuroblastoma treatment in the post-genomic era.Journal of biomedical science · 2017
    Review
  13. Ras signaling through RASSF proteins.Seminars in cell & developmental biology · 2016
    Review
  14. Article
  15. Article
  16. Neonatal tumours.Pediatric surgery international · 2013
    Review
  17. Neuroblastoma and MYCN.Cold Spring Harbor perspectives in medicine · 2013
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Paula LázcozDepartamento de Ciencias de la Salud, Universidad Pública de Navarra, Pamplona, Spain. paula.lazcoz@unavarra.es
Jorge Muñoz
Manuel Nistal
Angel Pestaña
Ignacio Encío
Javier S Castresana
Universidad de Navarra · ESUniversidad Publica de Navarra · ESHospital Universitario La Paz · ESUniversidad Autónoma de Madrid · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundEpigenetic alterations and loss of heterozygosity are mechanisms of tumor suppressor gene inactivation. A new carcinogenic pathway, targeting the RAS effectors has recently been documented. RASSF1A, on 3p21.3, and NORE1A, on 1q32.1, are among the most important, representative RAS effectors.

methodsWe screened the 3p21 locus for the loss of heterozygosity and the hypermethylation status of RASSF1A, NORE1A and BLU (the latter located at 3p21.3) in 41 neuroblastic tumors. The statistical relationship of these data was correlated with CASP8 hypermethylation. The expression levels of these genes, in cell lines, were analyzed by RT-PCR.

resultsLoss of heterozygosity and microsatellite instability at 3p21 were detected in 14% of the analyzed tumors. Methylation was different for tumors and cell lines (tumors: 83% in RASSF1A, 3% in NORE1A, 8% in BLU and 60% in CASP8; cell lines: 100% in RASSF1A, 50% in NORE1A, 66% in BLU and 92% in CASP8). In cell lines, a correlation with lack of expression was evident for RASSF1A, but less clear for NORE1A, BLU and CASP8. We could only demonstrate a statistically significant association between hypermethylation of RASSF1A and hypermethylation of CASP8, while no association with MYCN amplification, 1p deletion, and/or aggressive histological pattern of the tumor was demonstrated.

conclusion1) LOH at 3p21 appears in a small percentage of neuroblastomas, indicating that a candidate tumor suppressor gene of neuroblastic tumors is not located in this region. 2) Promoter hypermethylation of RASSF1A and CASP8 occurs at a high frequency in neuroblastomas.

Indexed as

DNA MethylationPromoter Regions, GeneticAdaptor Proteins, Signal TransducingAdolescentApoptosis Regulatory ProteinsCaspase 8Cell Line, TumorChildChild, PreschoolChromosomal InstabilityChromosomes, Human, Pair 3Cytoskeletal ProteinsGene Expression Regulation, NeoplasticGenes, Tumor SuppressorHumansInfantAdaptor Proteins, Signal TransducingApoptosis Regulatory ProteinsCASP8 protein, humanCaspase 8Cytoskeletal ProteinsMonomeric GTP-Binding ProteinsRASSF1 protein, humanRASSF5 protein, humanTumor Suppressor ProteinsZMYND10 protein, human

Identifiers

PMID17064406
PMCPMC1634754
OpenAlexW1535501944

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.