Evidence map›Paper›PMID 17064256›Full record

ArticleThe Biochemical journal2007

Slow-onset inhibition of fumarylacetoacetate hydrolase by phosphinate mimics of the tetrahedral intermediate: kinetics, crystal structure and pharmacokinetics.

Raynard L Bateman, Justin Ashworth, John F Witte, L-J Baker, Pullooru Bhanumoorthy, David E Timm, Thomas D Hurley, Markus Grompe, Ronald W McClard

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 17 citations in OpenAlex.

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  5. E3 Ubiquitin Ligase APC/CInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Raynard L BatemanArthur F. Scott Laboratory of Chemistry, Reed College, 3203 SE Woodstock Blvd, Portland, OR 97202, USA.
Justin Ashworth
John F Witte
L-J Baker
Pullooru Bhanumoorthy
David E Timm
Thomas D Hurley
Markus Grompe
Ronald W McClard
Indiana University – Purdue University Indianapolis · USReed College · USOregon Health & Science University · US

Funding

TRANSPLANTATION ASSAY FOR LIVER REPOPULATING CELLSR01DK051592 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1997 to 2015
$4.8M
TYROSINEMIA TYPE I--STRUCTURAL BIOLOGY AND LIVER DISEASER01DK054738 · NIDDK · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TIMM, DAVID E · 1999 to 2000
$194k
TRANSPLANTATION ASSAY FOR LIVER REPOPULATING CELLSR55DK051592 · NIDDK · OREGON HEALTH AND SCIENCE UNIVERSITY · PI GROMPE, MARKUS · 1996 to 1996
–
NIDDK NIH HHS DK-51592NIDDK NIH HHS DK-54738NIDDK NIH HHS R01 DK051592NIGMS NIH HHS R15GM60032
6 · The paper itself

Abstract

FAH (fumarylacetoacetate hydrolase) catalyses the final step of tyrosine catabolism to produce fumarate and acetoacetate. HT1 (hereditary tyrosinaemia type 1) results from deficiency of this enzyme. Previously, we prepared a partial mimic of the putative tetrahedral intermediate in the reaction catalysed by FAH co-crystallized with the enzyme to reveal details of the mechanism [Bateman, Bhanumoorthy, Witte, McClard, Grompe and Timm (2001) J. Biol. Chem. 276, 15284-15291]. We have now successfully synthesized complete mimics CEHPOBA {4-[(2-carboxyethyl)-hydroxyphosphinyl]-3-oxobutyrate} and COPHPAA {3-[(3-carboxy-2-oxopropyl)hydroxyphosphinyl]acrylate}, which inhibit FAH in slow-onset tight-binding mode with K(i) values of 41 and 12 nM respectively. A high-resolution (1.35 A; 1 A=0.1 nm) crystal structure of the FAH.CEHPOBA complex was solved to reveal the affinity determinants for these compounds and to provide further insight into the mechanism of FAH catalysis. These compounds are active in vivo, and CEHPOBA demonstrated a notable dose-dependent increase in SA (succinylacetone; a metabolite seen in patients with HT1) in mouse serum after repeated injections, and, following a single injection (1 mumol/g; intraperitoneal), only a modest regain of FAH enzyme activity was detected in liver protein isolates after 24 h. These potent inhibitors provide a means to chemically phenocopy the metabolic defects of either HT1 or FAH knockout mice and promise future pharmacological utility for hepatocyte transplantation.

Indexed as

AnimalsBinding SitesBiomimetic MaterialsButyratesCrystallography, X-RayHumansHydrolasesKineticsMaleMiceMice, Inbred C57BLModels, MolecularMolecular StructureOrganophosphorus CompoundsPhosphinic AcidsProtease Inhibitors4-((2-carboxyethyl)hydroxyphosphinyl)-3-oxobutyrateButyratesfumarylacetoacetaseHydrolasesOrganophosphorus CompoundsPhosphinic AcidsProtease Inhibitors

Identifiers

PMID17064256
PMCPMC1798426
OpenAlexW2013911261

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.